BS27822.complete Sequence
1091 bp assembled on 2011-09-22
GenBank Submission: KX805325
> BS27822.complete
GAAGTTATCAGTCGACATGTTCCTACAATGTCCTTCGGTGATGCGAGGTT
CTAAACACTTTTCTCAGCACATGAGCGATTTCAGTTCTGGAAGCCATCAG
AACACGGACAATTTCAGCGATTGTTGGTTGGAATCCAATAGTAGTCAGGA
TTCGTATTTCGGTCAATCTAGTCGACTGAAACTTGCCCTCCTGGATTACA
AACAGTTCAACGCTGCAAGGACTATTCAGTGTCATGTGAGGGGATTTTTG
GCCAGAAGTACTCTTAAAAGGCAGATCGATGCTGCCACCATCATTAGCAA
GTGGTGGCGTGGTTTCTGGGTGCGACACTCAAAGTTCTCCTTTATGCAAC
AGCTGTTACAGCAGAGGATCATCCAGTATCACCACGATATGGCCACTAAG
ATTCAGGCGCTGTTCCGCGGATGGATGACTCGCCAGTACTTCCAGGACTT
CCAGGGCATGAAGTCGCTCCGAATACAGTATGTGGAAGATATGCTCAGTT
CGCTTTACAGAAAGGTCCACAGAATGCGAAAGGAACATATGCTACCAGGA
ATTTATGCATTAAGGGAATCTGATCTGCTAAGTAAGATCGAGGACCTTTC
TAGTACCTTTGGCTACCGCTTTCATAACGGCCGTGTGCGGGCAGCCATTG
CAATGAAGCGATCCTTCATAAACGACCGGCGACATGAGTTCCGAAAGGGA
AATACTTATTCCAAAGTGCCTTATCCGGGACCCTATATAGAAAACATTAA
CGACTTAGAATTTACCTTGCCAAAGCGAATGACACCACGTTTGCAGCGTA
CGATTCTGGTATATGACAAGGCAATGAGAGATAAGAATGTGGAGAAGGTG
TACATGAACTATTCAACCAAACGTCGTATGAGCATGCATGTCATGCGAGA
GAATATGCGAAATCGTTTTTGCAAAGATTTTGTAAAGCGTTTGGCAAAAA
GGAACAAGACACGAAACGCACAGGATCGTAACATTAAATACTATCTTGAT
GATCTTCTAACGACCGCTGATGAATATAATTGTTTTTGCAAGCCCCAAGT
AAAAGACGATAGCTTGTGCCAATAGAAGCTTTCTAGACCAT
BS27822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-RC | 1059 | CG12448-PC | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-RC | 1293 | CG12448-RC | 65..1124 | 16..1075 | 5300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15941505..15942062 | 16..573 | 2790 | 100 | Plus |
| 2L | 23513712 | 2L | 15942125..15942420 | 574..869 | 1480 | 100 | Plus |
| 2L | 23513712 | 2L | 15942480..15942685 | 870..1075 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:49:29 has no hits.
BS27822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:15 Download gff for
BS27822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 71..1124 | 22..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:18 Download gff for
BS27822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 71..1124 | 22..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:05 Download gff for
BS27822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 71..1124 | 22..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:05 Download gff for
BS27822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15942480..15942685 | 870..1075 | 100 | | Plus |
| 2L | 15941511..15942062 | 22..573 | 100 | -> | Plus |
| 2L | 15942125..15942420 | 574..869 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:18 Download gff for
BS27822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15941511..15942062 | 22..573 | 100 | -> | Plus |
| arm_2L | 15942125..15942420 | 574..869 | 100 | -> | Plus |
| arm_2L | 15942480..15942685 | 870..1075 | 100 | | Plus |
BS27822.pep Sequence
Translation from 16 to 1074
> BS27822.pep
MFLQCPSVMRGSKHFSQHMSDFSSGSHQNTDNFSDCWLESNSSQDSYFGQ
SSRLKLALLDYKQFNAARTIQCHVRGFLARSTLKRQIDAATIISKWWRGF
WVRHSKFSFMQQLLQQRIIQYHHDMATKIQALFRGWMTRQYFQDFQGMKS
LRIQYVEDMLSSLYRKVHRMRKEHMLPGIYALRESDLLSKIEDLSSTFGY
RFHNGRVRAAIAMKRSFINDRRHEFRKGNTYSKVPYPGPYIENINDLEFT
LPKRMTPRLQRTILVYDKAMRDKNVEKVYMNYSTKRRMSMHVMRENMRNR
FCKDFVKRLAKRNKTRNAQDRNIKYYLDDLLTTADEYNCFCKPQVKDDSL
CQ*
BS27822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-PC | 352 | CG12448-PC | 1..352 | 1..352 | 1873 | 100 | Plus |
| CG13544-PA | 367 | CG13544-PA | 34..366 | 40..351 | 428 | 30.4 | Plus |
| CG18063-PD | 371 | CG18063-PD | 44..306 | 52..309 | 374 | 31.2 | Plus |
| CG18063-PE | 372 | CG18063-PE | 45..307 | 52..309 | 374 | 31.2 | Plus |
| CG18063-PC | 372 | CG18063-PC | 45..307 | 52..309 | 374 | 31.2 | Plus |
