Clone BS27829 Report

Search the DGRC for BS27829

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:278
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptslx1-RB
Protein status:BS27829.pep: gold
Sequenced Size:926

Clone Sequence Records

BS27829.complete Sequence

926 bp assembled on 2011-09-22

GenBank Submission: KX805048

> BS27829.complete
GAAGTTATCAGTCGACATGAACTCCTACGACCCACAGGACACAGCTTCTC
AACAGGAGGAATCCGTCGCGCTGAAGGGCCACTTCTACGGCGTCTATTTG
CTATGCAGTCAGAGCTTGGATCCTCGCTACCGGGGAAAATGCTACGTGGG
CTTCACCGTGAACCCCAAACGGCGGATACGCCAACACAATCTTGGTTGTG
ATTTCGGTGGCGCGAGGAAAACCAGTCGCAAAGGGCCGTGGCTGATGGTA
ATGATCGTGCACGGATTCCCGAATAATACAGTGGCACTCCAGTTTGAATG
GGCTTGGCAACAGCCGTCGCTTTCAACTAGGCTTAAAATGTACCCTGAAT
TAAAACGAAAACTGCCCAGGGAGACGTTCTTTGACTACAACTTTAGGATC
CTTAGTAATATGCTGGGGGTTGGCCCTTGGAATAGATTACCGCTCACCGT
TCGCTGGCTAGAAACGGATTACGAGAGGCCATTCAGCAAGGCACTGCCTA
AACACATGGAAATTGTGAGTGGCAAGGTTTCCATTAGTGCCTCACAACGT
AGGAGACCTGATGATGCAGTACCTCCTCCACCTGTGGCGTGGGCTTCCGA
GTGCCACCTTTGTATGCAGGAAATGGAGCAACCGGAGAAATCCCGCCTGG
GATGCACAAATCAAATGTGTCGGCTGACATGCCATATGGTGTGCCTGGCC
AATTACCTTCTGGGCGACGAGCCAGGTCATTACATCCCAGTTGGAGGAGA
GTGTCCGCTTTGTGAGACTCGTCTCAGCTGGGCAGCACTGCTGCAGCGCA
AACGTCTTCTTTTGGGCGTGCCTGAAGAACTGCAGGATCATGACGAGGAT
CTGAGCGACGACATTGATGTAGACAGCGATATTGAAGATACCCCGGAGCT
CAGCGATTAGAAGCTTTCTAGACCAT

BS27829.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
slx1-RB 894 CG18271-PB 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
slx1-RB 1139 CG18271-RB 34..927 17..910 4470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4643543..4644424 29..910 4410 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:53:03 has no hits.

BS27829.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:17 Download gff for BS27829.complete
Subject Subject Range Query Range Percent Splice Strand
CG18271-RB 23..916 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:43 Download gff for BS27829.complete
Subject Subject Range Query Range Percent Splice Strand
slx1-RB 34..927 17..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:06 Download gff for BS27829.complete
Subject Subject Range Query Range Percent Splice Strand
slx1-RB 34..927 17..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:06 Download gff for BS27829.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4643544..4644424 30..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:43 Download gff for BS27829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 469266..470146 30..910 100   Plus

BS27829.pep Sequence

Translation from 16 to 909

> BS27829.pep
MNSYDPQDTASQQEESVALKGHFYGVYLLCSQSLDPRYRGKCYVGFTVNP
KRRIRQHNLGCDFGGARKTSRKGPWLMVMIVHGFPNNTVALQFEWAWQQP
SLSTRLKMYPELKRKLPRETFFDYNFRILSNMLGVGPWNRLPLTVRWLET
DYERPFSKALPKHMEIVSGKVSISASQRRRPDDAVPPPPVAWASECHLCM
QEMEQPEKSRLGCTNQMCRLTCHMVCLANYLLGDEPGHYIPVGGECPLCE
TRLSWAALLQRKRLLLGVPEELQDHDEDLSDDIDVDSDIEDTPELSD*

BS27829.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
slx1-PB 297 CG18271-PB 1..297 1..297 1626 100 Plus