BS27836.complete Sequence
1399 bp assembled on 2011-09-22
GenBank Submission: KX801911
> BS27836.complete
GAAGTTATCAGTCGACATGTACATAATTTAAAAGAGATTTTCGAAAACAA
AATGACTTGCGATGATACCACCGAAGCGCTCGCCACTCACATGTGTGAGC
TGTTGGAGTTTTATATGCTGCCGGAGCTGAAGGAGGACCTGGACAACATT
CAGCTGGAGACGTCGCAATTCGACAGCTACCATTCCCTACTTATCCAGGA
TCTGCCAAAGCTCTACGATTTGGTGCAGGAATTCCTCCTGAAAAGTGGTG
ATGCAGGACACGAAGAGCTAAGATTCAAGCTCCTCCTGCTGATTTGCGAA
TTGACAGCTTCGCCTACAATTTACCAACTAAAGGACGACTCTGGTAATCT
CCTGAAGTATGCTAATGATTTGGCTAGTAAGCTGTCTTCCCATTGGTGGG
AGTCGACGGATGATCAATTCCTGAAATACTACGAGAAGAAACTGCACAGG
GATTGCTGGAAGAGACAACTAGGAGCTGTGCATGGTTTCGGCAGATATCT
AGAGCTTCGTTACGGAAAGAAATCCGCAATGTCCACCCAAATGTTGGCTT
TTGCACTATCCGTGGGTCTTAATGTGCGCGAATGCTATGATACTATCTAC
AAGCAACTTGGGGTCAAGATCTTCTCAGTGATGTTAAAATTTAGCGACTC
CAAGGACATTCAGGAACTGAACGTGCACAGTGTGATCTATGACCATGCCC
TCAAGGATGTCTACAACATGGACTCAATTGAAGCCATCGAATCTGTTTGG
AACTGCCTGTATTTCTGTCTTGATCACTTTGTAGATCTAGATGCTTTCAC
GTGGAACCAATGCGACGACATGCTGGAACGCCTCATTCAGAACGTGACAA
TGGCCTCCAGCCCAAAAGTTTTAATCTGCCTGCTGCAGTATATCATCCGA
TTAGGATACTACTTCACCATCAATCGCAGCGATGTGAAAACTGCTTTGGC
CATGGATATATGCGAACCAGATAAATTGGTAGCGTGTCGGGACGTATGCC
TTGCTCTAAATGTTAGCACCAGCTATCGTTGGGCCAAGGCCATCCTACAA
ATGCTTGTCCTGGAGTCGAGCAAGCTGCTCCAAGGTGTCGAGGTATGCAC
TGCTTTACTGGATCAACTGCTAAGATGCTATCTGGTTTGCATCATGCCTA
TTCCTCTGCAAGCTTTGCATCCGCACCTGCCGGAGTTTTACGGGAAGTTT
GTGGCTGTGTTAATGGAATGTTTGGTGGCCCACGAGAAGGCACCTCCAGT
TCTAAAACTCGTTTCGCGGTTCATCGAAGTCTTTAGCTTCCAACTGGAAA
ACGGGATAACCGAAACAATGCCCGCCCAACTATCAGAATTCAAGGAGGCT
CTGTCAATTGTGCACCACAAGATTTGTGAATAAAAGCTTTCTAGACCAT
BS27836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16734-RD | 1332 | CG16734-PD | 1..1332 | 52..1383 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16734-RD | 1393 | CG16734-RD | 11..1375 | 20..1384 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9256071..9256527 | 801..1257 | 2285 | 100 | Plus |
| 3R | 32079331 | 3R | 9255062..9255309 | 20..267 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 9255360..9255598 | 266..504 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 9255860..9256015 | 646..801 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 9255661..9255804 | 503..646 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 9256587..9256713 | 1258..1384 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:52:29 has no hits.
BS27836.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:16 Download gff for
BS27836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1372 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:36 Download gff for
BS27836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1372 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:55 Download gff for
BS27836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1372 | 17..1381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:55 Download gff for
BS27836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9255058..9255309 | 17..267 | 99 | -> | Plus |
| 3R | 9255362..9255598 | 268..504 | 100 | -> | Plus |
| 3R | 9255663..9255803 | 505..645 | 100 | -> | Plus |
| 3R | 9255860..9256015 | 646..801 | 100 | -> | Plus |
| 3R | 9256072..9256527 | 802..1257 | 100 | -> | Plus |
| 3R | 9256587..9256710 | 1258..1381 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:36 Download gff for
BS27836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5080780..5081031 | 17..267 | 99 | -> | Plus |
| arm_3R | 5081084..5081320 | 268..504 | 100 | -> | Plus |
| arm_3R | 5081385..5081525 | 505..645 | 100 | -> | Plus |
| arm_3R | 5081582..5081737 | 646..801 | 100 | -> | Plus |
| arm_3R | 5081794..5082249 | 802..1257 | 100 | -> | Plus |
| arm_3R | 5082309..5082432 | 1258..1381 | 100 | | Plus |
BS27836.pep Sequence
Translation from 51 to 1382
> BS27836.pep
MTCDDTTEALATHMCELLEFYMLPELKEDLDNIQLETSQFDSYHSLLIQD
LPKLYDLVQEFLLKSGDAGHEELRFKLLLLICELTASPTIYQLKDDSGNL
LKYANDLASKLSSHWWESTDDQFLKYYEKKLHRDCWKRQLGAVHGFGRYL
ELRYGKKSAMSTQMLAFALSVGLNVRECYDTIYKQLGVKIFSVMLKFSDS
KDIQELNVHSVIYDHALKDVYNMDSIEAIESVWNCLYFCLDHFVDLDAFT
WNQCDDMLERLIQNVTMASSPKVLICLLQYIIRLGYYFTINRSDVKTALA
MDICEPDKLVACRDVCLALNVSTSYRWAKAILQMLVLESSKLLQGVEVCT
ALLDQLLRCYLVCIMPIPLQALHPHLPEFYGKFVAVLMECLVAHEKAPPV
LKLVSRFIEVFSFQLENGITETMPAQLSEFKEALSIVHHKICE*
BS27836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16734-PD | 443 | CG16734-PD | 1..443 | 1..443 | 2321 | 100 | Plus |
