BS27842.complete Sequence
1871 bp assembled on 2013-09-16
GenBank Submission: KX803886
> BS27842.complete
GAAGTTATCAGTCGACATGGTTCGAGTATCGCTAGTTCCATTCATTATAA
TCGGATTTATGGCGCACTTTTGTGCGTGTGAGGATGTTACATCCTCAGAT
CTTCTGTATATTAAGACCATGGGACCCTCGGCGATTTTAACAAAAATGCC
GAACATAACCAATGAGTTTAGTTCAAGAATTTTCAGTTCTTTTCGCATAT
TGCCATCATCAAAGCCAAAAACAAATGGATCGCTTAAGCGTAGTCAAAAC
GCCACGAACTTGAGTTACTCCTCCTCTGAGATTTCCAATCAAAGACGAGT
TCGACGAAAAGCAGCGGCCGACATGCTTAGCCGTAATATCTCAATGATTT
TGGAAAATCTACTCAAACGCTACGAGCAATCCCAACTACCCACGCATGGC
CAGGGAGTTCCGACGGTGGTGCAAACGAATATCCTAATCCGTAGCATGGG
TCCAGTTTCCGAATTGGACATGGACTACTCGATGGATTGCTATTTCCGGC
AGTATTGGCGGGACAAACGGCTGAGCTTCAAGGGACCCATCAAGAGCTTA
TCTCTGAGCATCAAAATGCTGGACAAGATCTGGAGGCCAGATACATATTT
TTACAATGGCAAGCACTCGCAAATTCACATGATTACCGTGCCCAATAAAT
TGCTTCGATTGGATCAGAATGGAGGGATTCTGTATTCAATGAGACTAACA
ATTAAGGCTACTTGTCCCATGGAGCTGCAAAACTTTCCAATGGATAGACA
ATCATGCCCTCTAGTAATTGGAAGTTATGGCTATATTAACCAACAGTTGA
TCTATGAATGGAAAAATCAGGACGATGCGGTGTCCTTTGTTCCAGGAATG
ACTCTAAATCAATTCGATCTCATTAGCATGATGCATCGCAATTTTACAAC
CGTTCGACGGGAAGGTGATTTTTCAGTCCTGCATGTAGCTTTTAATCTCA
AACGTCACACAGGATATTTTCTCATTCAAGTATATGTACCCTGTATTCTG
ATCGTGGTACTGTCATGGGTCTCCTTCTGGATACATCGCGAAGCCACCAG
CGACAGAGTGAGTCTTTGCGTTACCTCAGTGCTGACCCTGTCCACCATTA
GTCTGGACTCACGAACCGATTTGCCAAAAGTCAAATATGCCACAGCTTTG
GATTGGTTTCTATTGATGAGCTTTCTGTACTGCATTGCCACCCTGTTGGA
GTTTGCCGGTGTCCACTACTTTACAAAACTGGGAAGCGGAGAGAGTCCGC
AACTGGAGGATCAGTGGGAGGACATCTGTATAGCCAACTCATTATCGGAT
CATGCCGGCGAGGTGGATGGCGATGGTGAAGCTGACGCCGACCCATTTGC
GGATGAGGACTCCAGTAATGGCAGCGAAAATGATGACAACGAGGCTGGAG
CAAGTGAATCCGTTGAGTCCAAGAGCGGTGTCTGTGTATGCAACAAAAAC
GATGCTCTCGGTCTGGAATATGAGGTTTCGCTACAGAATTCACTAGCTGG
TGCTGGTTTTCTCAAAAGAAATGCTATTTTTTGTCCCACATATAACGATC
CATCGTACATTTTGCCAAACACCATGGAGAGAACCACCCAAACGGAGCCT
CCGGCCGTTTCGCGATTGCATCAGATGTGGATGTGCCTGAAGAGCGACAA
CAGTTTCCGGAAACAACGAGAACGCAACGCTGCGGCCCAAAAGAGCGAAC
AAGGTGGCGCCAACTGCTATGTCAATAGTGTATCCCTAATCGATAGGGTG
GCGCGTATTGCCTTCCCCATGTCCTTTGCATTTCTGAACCTACTGTACTG
GTGGGCCTACGGAATGTACAAGAAGGAGTTCTCATGGTCCAATATGAAGT
CATAGAAGCTTTCTAGACCAT
BS27842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-RB | 1839 | CG8916-PB | 1..1839 | 17..1855 | 9195 | 100 | Plus |
| CG8916-RC | 1533 | CG8916-PC | 1..1533 | 323..1855 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-RB | 2019 | CG8916-RB | 148..1986 | 17..1855 | 9195 | 100 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 185..1826 | 214..1855 | 8210 | 100 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 148..185 | 17..54 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15922468..15923107 | 54..693 | 3200 | 100 | Plus |
| X | 23542271 | X | 15923592..15924159 | 980..1547 | 2840 | 100 | Plus |
| X | 23542271 | X | 15924217..15924525 | 1547..1855 | 1545 | 100 | Plus |
| X | 23542271 | X | 15923320..15923525 | 777..982 | 1030 | 100 | Plus |
| X | 23542271 | X | 15923166..15923250 | 692..776 | 425 | 100 | Plus |
| X | 23542271 | X | 15922102..15922139 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:02:18 has no hits.
BS27842.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:38 Download gff for
BS27842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1986 | 17..1855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:56 Download gff for
BS27842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 148..1986 | 17..1855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:56 Download gff for
BS27842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15922102..15922139 | 17..54 | 100 | -> | Plus |
| X | 15922469..15923107 | 55..693 | 100 | -> | Plus |
| X | 15923168..15923250 | 694..776 | 100 | -> | Plus |
| X | 15923320..15923522 | 777..979 | 100 | -> | Plus |
| X | 15923592..15924158 | 980..1546 | 100 | -> | Plus |
| X | 15924217..15924525 | 1547..1855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:38 Download gff for
BS27842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15816135..15816172 | 17..54 | 100 | -> | Plus |
| arm_X | 15816502..15817140 | 55..693 | 100 | -> | Plus |
| arm_X | 15817201..15817283 | 694..776 | 100 | -> | Plus |
| arm_X | 15817353..15817555 | 777..979 | 100 | -> | Plus |
| arm_X | 15817625..15818191 | 980..1546 | 100 | -> | Plus |
| arm_X | 15818250..15818558 | 1547..1855 | 100 | | Plus |
BS27842.pep Sequence
Translation from 16 to 1854
> BS27842.pep
MVRVSLVPFIIIGFMAHFCACEDVTSSDLLYIKTMGPSAILTKMPNITNE
FSSRIFSSFRILPSSKPKTNGSLKRSQNATNLSYSSSEISNQRRVRRKAA
ADMLSRNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSEL
DMDYSMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKH
SQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLV
IGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREG
DFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSL
CVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVH
YFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSS
NGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLK
RNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQ
RERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAYGM
YKKEFSWSNMKS*
BS27842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-PB | 612 | CG8916-PB | 1..612 | 1..612 | 3208 | 100 | Plus |
| CG8916-PC | 510 | CG8916-PC | 1..510 | 103..612 | 2700 | 100 | Plus |
| Rdl-PF | 606 | CG10537-PF | 26..356 | 79..404 | 592 | 38.6 | Plus |
| Rdl-PE | 606 | CG10537-PE | 26..356 | 79..404 | 592 | 38.9 | Plus |
| Lcch3-PC | 496 | CG17336-PC | 26..342 | 93..401 | 586 | 39.9 | Plus |
