BS27848.complete Sequence
1718 bp assembled on 2013-09-16
GenBank Submission: KX805411
> BS27848.complete
GAAGTTATCAGTCGACATGTTGCACTGCCAAGTGGAAGGGGCAAAAGCAG
AGCAACGTGAGTGTCCTGTGATGCACTCAGAGAATTCTGCGGAAACTTTC
AGTTCGGAGGAATCCCAAGCCAGTGACTGTAACCAGCCGTTGGATGTTCA
AAGTCCAAAGCTGACAACAAACATAGAAGAGTCCTTTAAGGTGGACTGTA
AGCTTTCGCTGAATACTCTTCTGTCACCTATTAATATCACCGATCCATTG
CTCATGTGTTCTATATCAGAGTTTAACAAAGAGGAACAAACTATGGAGCC
GTATTTTATTCAGGAATTAGATATGGCTTGTGCTGGCCAAGAAGTTGAGC
AAGTTGCGGAGGAAAATGTATTCGAAACTGGACCACAGTTGAAGCTACCG
GAAAATCAACCTATCAACGATTCGATAACAACAGAAACTAATGAAACGAA
GTTACCGTCAACGGAAGCACTAAATGTTTTAAATTTAGCAGAATTCAGTG
AACCAGTAATGGAAAAATCAAATATATCCATTGAAGAAGTCAATCTTACA
GGAGCCGAAGAAATAAATGAACCCATAAGTGATGAACCAAATAGTCAACT
AGTTGAAAGTGCTGCCAAACTACAGCCAAAATCACTTGGAATTCAAATAC
CTCCTCTACAGATCGAAGATTTGATTTCTCCATTAGTAGAACAACCGAAG
ATAGCAACTAAACTGGGTGTTATTAGTTTCTTGACAGGAAACAAGTTGGC
TTTAACGCCCAGTGTAAGGCTCTCTTTTGGTGATAGAGTAACGACCAGGA
CAAACAAAAAATCCAAGGAAATTGTTCAACAGCAAGCTTCTAAAGCACTA
AAGGCGTTAATTTCAGTTTTCACAATGCAGCGAAGGCTAGAGGCATCACA
GTGTGATAATTCCAATAATAGCCGATCGAAACGATTTGAACAACTAAAAA
GCTCTTTAACCTTTTCACGAGTATTTAGGCAGAACATCTTTCAGCCAACT
TCGAAGATAGAAAGCCGCCAGCAGAATACTGATGCTAACTCACTGGAGTC
TGGGGAACCCAATTTTAAAAGTACAAGCGCATACAAAGAACCACTACCCA
TACCCTACCGACAAGATGCTGGCGAAGGACTAACTTGTAATGGCTTGAAC
GTAAGCAAGGATTCAGTTTTTAGTGAGGTTTCCGAAAGTGATGTATCGGA
GACGCACAATAAGTTATTTGCGATGAAAAAAACACAGGAGGGGCTTAGTT
CGACCAGATCGATTGGCGAACTAAGTAACATTCTGAACAATGGTAGGGTA
TTGTTCAGCCAGCCCGTTAGACTTTTCTGTTTTAACAAATTGAAGGAGTG
GAAACGGCAAGGTAAAGTACCACGTTTCCATGAGAGTCCTTACCGTTCCC
CCTCCTTCTCAGGCGAGGGTCAAATCGAGGTGATCGAGCACCACGGATCA
TACTACATAGTACTCCATGACAAGGTCAGCGGGGAGCTCATCATCCACAT
GCGGGTGGACGAGAAGTGGCGCATCGACTACATGACCAAGAGTTCCTATA
GCTGCCGTTGGACCAACATCAACTACGCCAACTGCCGCGATGGCACCCTG
GAGAGGATCGCCTGCTCCTTCCGTGAACCCAGCCACGCTGCTGAGTTTGT
CGCCCGGATCCGGAATAGTGCACTCCAATCACGCCTCGAATGCAGTTCCT
AAAAGCTTTCTAGACCAT
BS27848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14128-RE | 1686 | CG14128-PE | 1..1686 | 17..1702 | 8430 | 100 | Plus |
| CG14128-RF | 1740 | CG14128-PF | 290..1740 | 252..1702 | 7255 | 100 | Plus |
| CG14128-RC | 1635 | CG14128-PC | 1..1346 | 17..1362 | 6730 | 100 | Plus |
| CG14128-RF | 1740 | CG14128-PF | 1..235 | 17..251 | 1175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14128-RE | 1898 | CG14128-RE | 47..1733 | 16..1702 | 8435 | 100 | Plus |
| CG14128-RF | 1950 | CG14128-RF | 335..1785 | 252..1702 | 7255 | 100 | Plus |
| CG14128-RC | 1847 | CG14128-RC | 47..1393 | 16..1362 | 6735 | 100 | Plus |
| CG14128-RF | 1950 | CG14128-RF | 45..280 | 16..251 | 1180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11880220..11881017 | 905..1702 | 3990 | 100 | Plus |
| 3L | 28110227 | 3L | 11879510..11880167 | 252..909 | 3275 | 99.8 | Plus |
| 3L | 28110227 | 3L | 11879220..11879455 | 16..251 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:02:04 has no hits.
BS27848.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:34 Download gff for
BS27848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RE | 53..1731 | 22..1700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:53 Download gff for
BS27848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14128-RE | 53..1731 | 22..1700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:53 Download gff for
BS27848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11879510..11880163 | 252..905 | 100 | -> | Plus |
| 3L | 11879226..11879455 | 22..251 | 100 | -> | Plus |
| 3L | 11880221..11881015 | 906..1700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:34 Download gff for
BS27848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11872326..11872555 | 22..251 | 100 | -> | Plus |
| arm_3L | 11872610..11873263 | 252..905 | 100 | -> | Plus |
| arm_3L | 11873321..11874115 | 906..1700 | 100 | | Plus |
BS27848.pep Sequence
Translation from 16 to 1701
> BS27848.pep
MLHCQVEGAKAEQRECPVMHSENSAETFSSEESQASDCNQPLDVQSPKLT
TNIEESFKVDCKLSLNTLLSPINITDPLLMCSISEFNKEEQTMEPYFIQE
LDMACAGQEVEQVAEENVFETGPQLKLPENQPINDSITTETNETKLPSTE
ALNVLNLAEFSEPVMEKSNISIEEVNLTGAEEINEPISDEPNSQLVESAA
KLQPKSLGIQIPPLQIEDLISPLVEQPKIATKLGVISFLTGNKLALTPSV
RLSFGDRVTTRTNKKSKEIVQQQASKALKALISVFTMQRRLEASQCDNSN
NSRSKRFEQLKSSLTFSRVFRQNIFQPTSKIESRQQNTDANSLESGEPNF
KSTSAYKEPLPIPYRQDAGEGLTCNGLNVSKDSVFSEVSESDVSETHNKL
FAMKKTQEGLSSTRSIGELSNILNNGRVLFSQPVRLFCFNKLKEWKRQGK
VPRFHESPYRSPSFSGEGQIEVIEHHGSYYIVLHDKVSGELIIHMRVDEK
WRIDYMTKSSYSCRWTNINYANCRDGTLERIACSFREPSHAAEFVARIRN
SALQSRLECSS*
BS27848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14128-PE | 561 | CG14128-PE | 1..561 | 1..561 | 2869 | 100 | Plus |
| CG14128-PF | 579 | CG14128-PF | 1..579 | 1..561 | 2837 | 96.7 | Plus |
| CG14128-PC | 544 | CG14128-PC | 1..544 | 1..561 | 2747 | 97 | Plus |
| CG14128-PB | 562 | CG14128-PB | 1..562 | 1..561 | 2715 | 93.8 | Plus |
