BS27861.complete Sequence
2117 bp assembled on 2013-09-16
GenBank Submission: KX802545
> BS27861.complete
GAAGTTATCAGTCGACATGGATTCTACTTTAAATATTGAGAATGTCAATG
ACCCAACATCCATTGCATCTGATTTATCGGCCGAAAACACTAAAGCAGAC
CTTGTTTCGCTAAATGAACCGAATGTCAATGACCAAACATCCAGTGCATC
TGATTTGACGGCCGAAAACACTAAAGCAGACCATGATTCGCTAAATAAAC
CTAAGGATTTTAATAACCAAATTCTGAACATTATATCGGATATAGATATA
AATATAAAAGCACAGGAAAAAATAACACAGCTTAAAGAACAAGAACTAAA
ACTCATTCAGAAACAGAATGATCTGGCAAATGAAATCCATAAGCAGCAGA
TCCTAGCTAAGCAGCTTAGTGCACAAAATCAGCTTAAACAAAATGAATGT
CAAAGTGGAGAGCTCGACTTACACAGTCAATATCAAAATGAGCGCGGCGG
ACCCACCTCGACACTGTATCAGGAAAAAAATATAGCCAGTAAAGAATCCG
CTAATGTGTCGAAGACGGTTGATTTGCGAAAAATATTTACACCTGCGACC
GATGCTGCTGAAATATTACCGAAAAACCGAAAGCTATATGCCTCGTCTGC
ATTTTATTCTCCAACACTACACCCTACAGTGGAAGACCAAGTCGAGCTAG
CTCGAAGAATTTCACATTCATTAAGCGATATAAGTAATCAAACCTCTAAG
GGTCAGTCTATGTATGTCAATCGCAAAAAACGCTCAGACAAATGGGTTCA
TGAAGGTGGATCTCAAGGGAATGATGCTATAAATCCATTTAAAGAAAATT
CTGAAACGAAATCCACAATGGAGGTTGCGAAGTTGGAAAAAATACCGCTA
AAGCTTATAATGAACCCAAACGGAAAAGTTCGTGATTATAATTCGCTAAA
AGATTTAATTAACGTTGAAGCTGGCCTTTTATCGCCTGACAATTGCGCTG
AACTAATAACTGCACTTCAACTTCATCAAGGACGAGGTGCAGAACTTTTT
GCGAAGCGCCGCAGAAAGGCTGATAATTGGGTAGTCGATGAATCCCATTC
AGGGACTCAATATCATCCATCTGGTATTCCAGATTTTCAGCAGTATCAAC
AAAGGCCTGTTCTAAGTCCAAACATTTTGCCGGCGTATTCTGATGCTGGA
AAGCACCGCGTCCAATTGAATATTCATCAAAATCAGCTAATTGAGAAGTA
TTCAAAACCAGGACTTCAAGTCGTTCAGTCTCCTTGGAAGGCAGCTTTGC
AAACTGGTTCAGCGAGCTCAGCCTTTCTAGAGGACACCAAGAGTTTTTCA
CCGCCTGCCTTAACACCAATTCCGTCTTCCCAAGCTGGTAGTAAGGACTG
GACGGACGCTAATGAGCCCATGCCTCATGGTTCTTCAAGGCGCAATACAA
ATGCCGTTGCTTCCTCGCCACGATCAGTCATTGTACCATCGAATCCACAA
AGGGATCTTGCATATACACCATGCGTTGCTCAGGGCTGGGGAGGTCGAAG
TGTAGAACTTCCAAAAGGCTTATACGTTCCGAAAGAAATATCTCTCTCAA
GTTATGCAGCACCTTCACAGCAGTGCGAAATTCACTCGAAACATTTTGAA
AGGCCATACGAAGACACTTTTCCGCGCACGTTTCCAAGGAACAACTACTC
AGCTAATAATAATTTTCCTGGAAATGATGGTATAGGTGAATTTCCTTTAT
CAAAGCCAACTGGGTTGACCACTGGAACACTACATCAACAGCCCTACTCA
CCGACTAGCTATAAAAAAACAGTACCTGGGCTCGAAAAAGTTGAGAATTT
TGCTAGGTATGAACAGCCTGATAGGAAAAGATTGACGAGTGGAAGTCCAC
AGTACCTAAACGCGCTACAAAACTCTCAAGTACGCAACGCATCGCCAATA
CCTTTTGGAACTTCATTAAATGAACAGACTTCCTGGCCTCCAAGATCTGT
GCTGCTACAGGGAGGCTCTCCCTCTCCGCTGCCAAACCACGTGCAAACCT
TTAACAAATGTGCCAAGGGTTGGGGATCCATACCAGTCAAGCAACAGTCC
TATTCAAGCCAATACAACTTACCTGGAAATCTACCGTACTCTGATTTTTA
GAAGCTTTCTAGACCAT
BS27861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RJ | 2085 | CG1674-PJ | 1..2085 | 17..2101 | 10425 | 100 | Plus |
| CG1674-RH | 2655 | CG1674-PH | 595..2655 | 41..2101 | 10305 | 100 | Plus |
| CG1674-RF | 2655 | CG1674-PF | 595..2655 | 41..2101 | 10305 | 100 | Plus |
| CG1674-RJ | 2085 | CG1674-PJ | 24..104 | 121..201 | 300 | 91.4 | Plus |
| CG1674-RJ | 2085 | CG1674-PJ | 105..185 | 40..120 | 300 | 91.4 | Plus |
| CG1674-RH | 2655 | CG1674-PH | 675..755 | 40..120 | 300 | 91.4 | Plus |
| CG1674-RH | 2655 | CG1674-PH | 595..674 | 122..201 | 295 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RJ | 2419 | CG1674-RJ | 195..2279 | 17..2101 | 10425 | 100 | Plus |
| CG1674-RH | 3016 | CG1674-RH | 816..2876 | 41..2101 | 10305 | 100 | Plus |
| CG1674-RF | 2899 | CG1674-RF | 699..2759 | 41..2101 | 10305 | 100 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 218..298 | 121..201 | 300 | 91.4 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 299..379 | 40..120 | 300 | 91.4 | Plus |
| CG1674-RH | 3016 | CG1674-RH | 896..976 | 40..120 | 300 | 91.4 | Plus |
| CG1674-RH | 3016 | CG1674-RH | 816..895 | 122..201 | 295 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 245178..245763 | 1516..2101 | 2930 | 100 | Plus |
| 4 | 1348131 | 4 | 243168..243586 | 985..1403 | 2095 | 100 | Plus |
| 4 | 1348131 | 4 | 237269..237560 | 203..494 | 1460 | 100 | Plus |
| 4 | 1348131 | 4 | 242459..242681 | 766..988 | 1115 | 100 | Plus |
| 4 | 1348131 | 4 | 240645..240839 | 579..773 | 960 | 99.5 | Plus |
| 4 | 1348131 | 4 | 243634..243749 | 1403..1518 | 580 | 100 | Plus |
| 4 | 1348131 | 4 | 240314..240410 | 494..590 | 440 | 96.9 | Plus |
| 4 | 1348131 | 4 | 234263..234345 | 39..121 | 415 | 100 | Plus |
| 4 | 1348131 | 4 | 236394..236475 | 121..202 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 236393..236474 | 39..120 | 305 | 91.5 | Plus |
| 4 | 1348131 | 4 | 234264..234344 | 121..201 | 300 | 91.4 | Plus |
Blast to na_te.dros performed 2014-11-28 14:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 577..646 | 246..315 | 116 | 62.9 | Plus |
BS27861.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:36 Download gff for
BS27861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RJ | 195..2279 | 17..2101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:54 Download gff for
BS27861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RJ | 195..2279 | 17..2101 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:54 Download gff for
BS27861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 231954..231977 | 17..40 | 100 | -> | Plus |
| 4 | 234265..234345 | 41..121 | 100 | -> | Plus |
| 4 | 236395..236475 | 122..202 | 100 | -> | Plus |
| 4 | 237269..237559 | 203..493 | 100 | -> | Plus |
| 4 | 240314..240398 | 494..578 | 100 | -> | Plus |
| 4 | 240645..240833 | 579..767 | 100 | -> | Plus |
| 4 | 242461..242679 | 768..986 | 100 | -> | Plus |
| 4 | 243170..243585 | 987..1402 | 100 | -> | Plus |
| 4 | 243634..243748 | 1403..1517 | 100 | -> | Plus |
| 4 | 245180..245763 | 1518..2101 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:36 Download gff for
BS27861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 252580..252603 | 17..40 | 100 | -> | Plus |
| arm_4 | 254891..254971 | 41..121 | 100 | -> | Plus |
| arm_4 | 257021..257101 | 122..202 | 100 | -> | Plus |
| arm_4 | 257895..258185 | 203..493 | 100 | -> | Plus |
| arm_4 | 260940..261024 | 494..578 | 100 | -> | Plus |
| arm_4 | 261271..261459 | 579..767 | 100 | -> | Plus |
| arm_4 | 263087..263305 | 768..986 | 100 | -> | Plus |
| arm_4 | 263796..264211 | 987..1402 | 100 | -> | Plus |
| arm_4 | 264260..264374 | 1403..1517 | 100 | -> | Plus |
| arm_4 | 265806..266389 | 1518..2101 | 100 | | Plus |
BS27861.pep Sequence
Translation from 16 to 2100
> BS27861.pep
MDSTLNIENVNDPTSIASDLSAENTKADLVSLNEPNVNDQTSSASDLTAE
NTKADHDSLNKPKDFNNQILNIISDIDINIKAQEKITQLKEQELKLIQKQ
NDLANEIHKQQILAKQLSAQNQLKQNECQSGELDLHSQYQNERGGPTSTL
YQEKNIASKESANVSKTVDLRKIFTPATDAAEILPKNRKLYASSAFYSPT
LHPTVEDQVELARRISHSLSDISNQTSKGQSMYVNRKKRSDKWVHEGGSQ
GNDAINPFKENSETKSTMEVAKLEKIPLKLIMNPNGKVRDYNSLKDLINV
EAGLLSPDNCAELITALQLHQGRGAELFAKRRRKADNWVVDESHSGTQYH
PSGIPDFQQYQQRPVLSPNILPAYSDAGKHRVQLNIHQNQLIEKYSKPGL
QVVQSPWKAALQTGSASSAFLEDTKSFSPPALTPIPSSQAGSKDWTDANE
PMPHGSSRRNTNAVASSPRSVIVPSNPQRDLAYTPCVAQGWGGRSVELPK
GLYVPKEISLSSYAAPSQQCEIHSKHFERPYEDTFPRTFPRNNYSANNNF
PGNDGIGEFPLSKPTGLTTGTLHQQPYSPTSYKKTVPGLEKVENFARYEQ
PDRKRLTSGSPQYLNALQNSQVRNASPIPFGTSLNEQTSWPPRSVLLQGG
SPSPLPNHVQTFNKCAKGWGSIPVKQQSYSSQYNLPGNLPYSDF*
BS27861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-PJ | 694 | CG1674-PJ | 1..694 | 1..694 | 3625 | 100 | Plus |
| CG1674-PH | 884 | CG1674-PH | 198..884 | 8..694 | 3587 | 99.9 | Plus |
| CG1674-PF | 884 | CG1674-PF | 198..884 | 8..694 | 3587 | 99.9 | Plus |
| CG1674-PE | 884 | CG1674-PE | 198..884 | 8..694 | 3587 | 99.9 | Plus |
| CG1674-PM | 843 | CG1674-PM | 198..843 | 8..694 | 3299 | 93.9 | Plus |
