BS27869.complete Sequence
824 bp assembled on 2011-09-22
GenBank Submission: KX802578
> BS27869.complete
GAAGTTATCAGTCGACATGGCACAGGAGTACAGTGTGCAGTTAACCTTCC
GTGAACAGTGGACGGATGAACGCCTCAAGTTCGACGATATCCAGGGTCGC
CTAAAGTATCTGACCCTGACGGAGGCGAACCGCGTGTGGATGCCCGATCT
TTTCTTCTCGAACGAGAAGGAGGGACACTTCCACAACATCATCATGCCCA
ATGTGTATATTCGCATCTTCCCCAACGGATCTGTGCTATATAGTATACGT
ATCTCGCTGACATTGGCCTGCCCAATGAACCTAAAGCTGTATCCGCTGGA
TAGACAGATCTGCTCACTACGGATGGCCAGCTATGGCTGGACCACCAACG
ACTTGGTCTTCCTGTGGAAGGAGGGCGATCCCGTACAGGTGGTAAAGAAC
TTACACCTACCTCGCTTCACACTGGAGAAGTTTCTGACTGATTACTGTAA
CAGTAAAACCAACACCGGTGAATACAGTTGCCTCAAAGTCGATCTACTAT
TCAAGCGAGAATTCTCATATTACTTAATACAAATTTATATACCATGCTGT
ATGTTGGTCATTGTATCATGGGTATCATTCTGGCTGGATCAAGGAGCAGT
ACCGGCGCGAGTGTCACTGGGTGTCACCACCCTGCTGACCATGGCCACCC
AGACGTCGGGCATAAACGCCTCCCTGCCGCCCGTTTCCTATACGAAGGCC
ATCGATGTGTGGACAGGCGTGTGTCTGACGTTCGTGTTCGGGGCCCTGCT
CGAGTTCGCCCTGGTGAACTATGCATCCCGATCAGGTTCGAATAAAGCTA
GTAATTGAAAGCTTTCTAGACCAT
BS27869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluClalpha-RE | 792 | CG7535-PE | 1..792 | 17..808 | 3960 | 100 | Plus |
| GluClalpha-RP | 1371 | CG7535-PP | 243..1018 | 25..800 | 3880 | 100 | Plus |
| GluClalpha-RN | 1392 | CG7535-PN | 243..1018 | 25..800 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluClalpha-RE | 1650 | CG7535-RE | 821..1613 | 17..809 | 3965 | 100 | Plus |
| GluClalpha-RP | 2548 | CG7535-RP | 897..1672 | 25..800 | 3880 | 100 | Plus |
| GluClalpha-RN | 2569 | CG7535-RN | 897..1672 | 25..800 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19760394..19760631 | 95..332 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 19764248..19764437 | 620..809 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 19763597..19763752 | 467..622 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 19760900..19761036 | 333..469 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 19760260..19760336 | 21..97 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7002..7043 | 161..202 | 111 | 73.8 | Plus |
BS27869.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:19 Download gff for
BS27869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluClalpha-RE | 577..1367 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:10 Download gff for
BS27869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluClalpha-RE | 577..1367 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:35 Download gff for
BS27869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluClalpha-RE | 821..1611 | 17..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:35 Download gff for
BS27869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19760255..19760334 | 17..95 | 96 | -> | Plus |
| 3R | 19760395..19760631 | 96..332 | 100 | -> | Plus |
| 3R | 19760900..19761034 | 333..467 | 100 | -> | Plus |
| 3R | 19763598..19763750 | 468..620 | 100 | -> | Plus |
| 3R | 19764249..19764435 | 621..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:10 Download gff for
BS27869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15585977..15586056 | 17..95 | 96 | -> | Plus |
| arm_3R | 15586117..15586353 | 96..332 | 100 | -> | Plus |
| arm_3R | 15586622..15586756 | 333..467 | 100 | -> | Plus |
| arm_3R | 15589320..15589472 | 468..620 | 100 | -> | Plus |
| arm_3R | 15589971..15590157 | 621..807 | 100 | | Plus |
BS27869.pep Sequence
Translation from 16 to 807
> BS27869.pep
MAQEYSVQLTFREQWTDERLKFDDIQGRLKYLTLTEANRVWMPDLFFSNE
KEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICS
LRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRFTLEKFLTDYCNSKTNT
GEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVS
LGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALV
NYASRSGSNKASN*
BS27869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluClalpha-PE | 263 | CG7535-PE | 1..263 | 1..263 | 1394 | 100 | Plus |
| GluClalpha-PP | 456 | CG7535-PP | 79..340 | 1..262 | 1372 | 98.5 | Plus |
| GluClalpha-PI | 456 | CG7535-PI | 79..340 | 1..262 | 1372 | 98.5 | Plus |
| GluClalpha-PN | 463 | CG7535-PN | 79..340 | 1..262 | 1372 | 98.5 | Plus |
| GluClalpha-PM | 456 | CG7535-PM | 82..340 | 4..262 | 1371 | 99.6 | Plus |
