BS27873.complete Sequence
926 bp assembled on 2011-10-21
GenBank Submission: KX800528
> BS27873.complete
GAAGTTATCAGTCGACATGAATATAGAAAAAACTATAACCTTTTCAGATC
CGAAAATGTCTGGATTGCCCACTGCCAGCATAACCGAGTGCACGGAGGAC
AGTAATACGCCAAAGCTGGCGCCGGATAAGCCATTATTGCCGGAAGAATG
CGTCTCTCCGGAGCCCAGTCGCAACCGGGAGCACTGCGATCCGCTGGACA
CGTCGCTGGTGAACACCAAGCAGCGGAGATCGCGGACGAACTTCACCCTG
GACCAGCTGAACGAGCTGGAGCGACTGTTCGAGGAGACCCACTATCCAGA
TGCCTTCATGCGCGAGGAACTGAGTCAGCGACTGGGCCTCAGCGAAGCTA
GAGTGCAGGTTTGGTTTCAAAATAGAAGGGCGAAATGTAGAAAGCACGAA
AACCAAATGCACAAAGGATTCCTCGTGGGCAGCCGGAGTCCGCCGATTGC
CACTCCGCTGGAACCATGTCGTGTGGCTCCCTACGTCAGCCTGGCCGCCC
TTCGCAGCTCATCCGTTCCATCCCATCCTGCCGCAGCGACCAGCTCGAAT
CCCCAGGCACCCGGTGTCTCCGGAACCAGCAGTTCCGGCAAGGTGGTCAC
CGTGGACTCACCACATAATCACAATCCGGCGATATCGCGCTCGGCTATCA
AACAGTTTTCCAGCACCGTGGCAGCAGCCGCCGCCTTTTCCGCTTTCGAT
CCGGCCATTATTTCGGTGGCAGCTCATCAGTACGCAGCTGCTATAACTAA
TGGAACCGTGCCGGCTGGATTGTTTTCTGTGCCCCAGTACTCCATAAATC
TGGCCGCCTTCGCCGCCGCCCACAGCAAGAGCTCTTCGATAGCCGATCTC
CGGATGAAGGCCAAGAAGCACTCGGAATCGTTGGGTCTGCAGGCGGACAT
GGTGCTCTAGAAGCTTTCTAGACCAT
BS27873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34367-RB | 894 | CG34367-PB | 1..894 | 17..910 | 4470 | 100 | Plus |
| CG34367-RC | 1263 | CG34367-PC | 399..1263 | 46..910 | 4325 | 100 | Plus |
| CG34367-RE | 672 | CG34367-PE | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34367-RB | 1095 | CG34367-RB | 36..929 | 17..910 | 4470 | 100 | Plus |
| CG34367-RC | 1703 | CG34367-RC | 673..1537 | 46..910 | 4325 | 100 | Plus |
| CG34367-RE | 1037 | CG34367-RE | 376..871 | 415..910 | 2480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10351713..10352056 | 360..17 | 1720 | 100 | Minus |
| 2L | 23513712 | 2L | 10348660..10348977 | 730..413 | 1590 | 100 | Minus |
| 2L | 23513712 | 2L | 10348017..10348200 | 910..727 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 10350719..10350782 | 417..354 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:28:02 has no hits.
BS27873.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 15:45:36 Download gff for
BS27873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 36..929 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:07 Download gff for
BS27873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 36..929 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:57 Download gff for
BS27873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34367-RB | 36..929 | 17..910 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:57 Download gff for
BS27873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10348660..10348973 | 417..730 | 100 | <- | Minus |
| 2L | 10350720..10350777 | 359..416 | 100 | <- | Minus |
| 2L | 10351715..10352056 | 17..358 | 100 | | Minus |
| 2L | 10348017..10348196 | 731..910 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:07 Download gff for
BS27873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10348660..10348973 | 417..730 | 100 | <- | Minus |
| arm_2L | 10350720..10350777 | 359..416 | 100 | <- | Minus |
| arm_2L | 10351715..10352056 | 17..358 | 100 | | Minus |
| arm_2L | 10348017..10348196 | 731..910 | 100 | <- | Minus |
BS27873.pep Sequence
Translation from 16 to 909
> BS27873.pep
MNIEKTITFSDPKMSGLPTASITECTEDSNTPKLAPDKPLLPEECVSPEP
SRNREHCDPLDTSLVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMRE
ELSQRLGLSEARVQVWFQNRRAKCRKHENQMHKGFLVGSRSPPIATPLEP
CRVAPYVSLAALRSSSVPSHPAAATSSNPQAPGVSGTSSSGKVVTVDSPH
NHNPAISRSAIKQFSSTVAAAAAFSAFDPAIISVAAHQYAAAITNGTVPA
GLFSVPQYSINLAAFAAAHSKSSSIADLRMKAKKHSESLGLQADMVL*
BS27873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34367-PB | 297 | CG34367-PB | 1..297 | 1..297 | 1517 | 100 | Plus |
| CG34367-PC | 420 | CG34367-PC | 134..420 | 11..297 | 1468 | 100 | Plus |
| CG34367-PE | 223 | CG34367-PE | 1..171 | 1..179 | 609 | 71.4 | Plus |
| hbn-PA | 409 | CG33152-PA | 152..339 | 68..259 | 251 | 38.4 | Plus |
| gsb-PA | 427 | CG3388-PA | 184..355 | 68..257 | 245 | 33.8 | Plus |
