Clone BS27880 Report

Search the DGRC for BS27880

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:278
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG34236-RB
Protein status:BS27880.pep: full length peptide match
Sequenced Size:571

Clone Sequence Records

BS27880.complete Sequence

571 bp assembled on 2011-09-22

GenBank Submission: KX800799

> BS27880.complete
GAAGTTATCAGTCGATATGCCACTGAAATTTCATAGATTGCTGCTGCCGC
TGCTCCTGTTCGCTTCTCAACTGCTGGCTGAAATTCCGCAGTGCTTTCAC
TTCACCTGGCTTGGTGCCTACTCGAATCACTCGAACATTCACACGGAAAC
CTGTGAGTCCAGAGTTGGTGACTTTAATGAAATACCCTGCGCAGAACCAT
TGGTTGTGACACCCGAAGATACAGTGCCGGATGTAAAGGCTCTGTGGCAG
AATAATACCGAGGATCGCGACAACTATCTGTGCCAAATGTCGCCGGGTCG
TTCATGTGTGAAATACTCGTACATATTCAAAGGCGGAATACAAAACATCA
CGTACATGTGCGCCAATGTAAACAGCACCAACGGATGCTATCGACAGACC
CACCCAAGTGGTATGGTTGTGGAGGCATGTGTCTGCACCTCCCGGGTGGG
CTTGATACCCTGTAATGGCTGCTCGAAGTCGCAGTGTGCTGTGCTGGGCT
GGGCACTTTGTTTGTACGGCCTTTATCAATGGCTAAATAAATATCGCATA
GTTTAAAGCTTTCTAGACCAT

BS27880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG34236-RC 540 CG34236-PC 1..538 17..554 2690 100 Plus
CG34236-RB 540 CG34236-PB 1..538 17..554 2690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG34236-RC 945 CG34236-RC 322..859 17..554 2690 100 Plus
CG34236-RB 646 CG34236-RB 102..639 17..554 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13604581..13604796 554..339 1080 100 Minus
2R 25286936 2R 13605063..13605191 212..84 645 100 Minus
2R 25286936 2R 13604864..13604989 338..213 630 100 Minus
2R 25286936 2R 13605268..13605334 83..17 335 100 Minus
Blast to na_te.dros performed 2014-11-27 08:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 830..863 361..395 109 82.9 Plus

BS27880.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:13 Download gff for BS27880.complete
Subject Subject Range Query Range Percent Splice Strand
CG34236-RB 72..609 17..554 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:57 Download gff for BS27880.complete
Subject Subject Range Query Range Percent Splice Strand
CG34236-RB 72..609 17..554 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:16 Download gff for BS27880.complete
Subject Subject Range Query Range Percent Splice Strand
CG34236-RB 102..639 17..554 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:16 Download gff for BS27880.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13604581..13604796 339..554 100 <- Minus
2R 13604864..13604989 213..338 100 <- Minus
2R 13605063..13605191 84..212 100 <- Minus
2R 13605268..13605334 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:57 Download gff for BS27880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9492086..9492301 339..554 100 <- Minus
arm_2R 9492369..9492494 213..338 100 <- Minus
arm_2R 9492568..9492696 84..212 100 <- Minus
arm_2R 9492773..9492839 17..83 100   Minus

BS27880.pep Sequence

Translation from 16 to 555

> BS27880.pep
MPLKFHRLLLPLLLFASQLLAEIPQCFHFTWLGAYSNHSNIHTETCESRV
GDFNEIPCAEPLVVTPEDTVPDVKALWQNNTEDRDNYLCQMSPGRSCVKY
SYIFKGGIQNITYMCANVNSTNGCYRQTHPSGMVVEACVCTSRVGLIPCN
GCSKSQCAVLGWALCLYGLYQWLNKYRIV*

BS27880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG34236-PC 179 CG34236-PC 1..179 1..179 997 100 Plus
CG34236-PB 179 CG34236-PB 1..179 1..179 997 100 Plus