BS27880.complete Sequence
571 bp assembled on 2011-09-22
GenBank Submission: KX800799
> BS27880.complete
GAAGTTATCAGTCGATATGCCACTGAAATTTCATAGATTGCTGCTGCCGC
TGCTCCTGTTCGCTTCTCAACTGCTGGCTGAAATTCCGCAGTGCTTTCAC
TTCACCTGGCTTGGTGCCTACTCGAATCACTCGAACATTCACACGGAAAC
CTGTGAGTCCAGAGTTGGTGACTTTAATGAAATACCCTGCGCAGAACCAT
TGGTTGTGACACCCGAAGATACAGTGCCGGATGTAAAGGCTCTGTGGCAG
AATAATACCGAGGATCGCGACAACTATCTGTGCCAAATGTCGCCGGGTCG
TTCATGTGTGAAATACTCGTACATATTCAAAGGCGGAATACAAAACATCA
CGTACATGTGCGCCAATGTAAACAGCACCAACGGATGCTATCGACAGACC
CACCCAAGTGGTATGGTTGTGGAGGCATGTGTCTGCACCTCCCGGGTGGG
CTTGATACCCTGTAATGGCTGCTCGAAGTCGCAGTGTGCTGTGCTGGGCT
GGGCACTTTGTTTGTACGGCCTTTATCAATGGCTAAATAAATATCGCATA
GTTTAAAGCTTTCTAGACCAT
BS27880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34236-RC | 540 | CG34236-PC | 1..538 | 17..554 | 2690 | 100 | Plus |
CG34236-RB | 540 | CG34236-PB | 1..538 | 17..554 | 2690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34236-RC | 945 | CG34236-RC | 322..859 | 17..554 | 2690 | 100 | Plus |
CG34236-RB | 646 | CG34236-RB | 102..639 | 17..554 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13604581..13604796 | 554..339 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 13605063..13605191 | 212..84 | 645 | 100 | Minus |
2R | 25286936 | 2R | 13604864..13604989 | 338..213 | 630 | 100 | Minus |
2R | 25286936 | 2R | 13605268..13605334 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 830..863 | 361..395 | 109 | 82.9 | Plus |
BS27880.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:13 Download gff for
BS27880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34236-RB | 72..609 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:57 Download gff for
BS27880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34236-RB | 72..609 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:16 Download gff for
BS27880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34236-RB | 102..639 | 17..554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:16 Download gff for
BS27880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13604581..13604796 | 339..554 | 100 | <- | Minus |
2R | 13604864..13604989 | 213..338 | 100 | <- | Minus |
2R | 13605063..13605191 | 84..212 | 100 | <- | Minus |
2R | 13605268..13605334 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:57 Download gff for
BS27880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9492086..9492301 | 339..554 | 100 | <- | Minus |
arm_2R | 9492369..9492494 | 213..338 | 100 | <- | Minus |
arm_2R | 9492568..9492696 | 84..212 | 100 | <- | Minus |
arm_2R | 9492773..9492839 | 17..83 | 100 | | Minus |
BS27880.pep Sequence
Translation from 16 to 555
> BS27880.pep
MPLKFHRLLLPLLLFASQLLAEIPQCFHFTWLGAYSNHSNIHTETCESRV
GDFNEIPCAEPLVVTPEDTVPDVKALWQNNTEDRDNYLCQMSPGRSCVKY
SYIFKGGIQNITYMCANVNSTNGCYRQTHPSGMVVEACVCTSRVGLIPCN
GCSKSQCAVLGWALCLYGLYQWLNKYRIV*
BS27880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34236-PC | 179 | CG34236-PC | 1..179 | 1..179 | 997 | 100 | Plus |
CG34236-PB | 179 | CG34236-PB | 1..179 | 1..179 | 997 | 100 | Plus |