BS27886.complete Sequence
884 bp assembled on 2011-09-22
GenBank Submission: KX803129
> BS27886.complete
GAAGTTATCAGTCGACATGTGGCTAAAGGCGCTTGTTCTACTGCTTTCGA
TTCGATATTTGGCGGCCACGTGCAATGTGTGTCAAAGTGATAGCAATGTC
GCTTGTCACAGTGAAACCACTTTTTCCATCTGCTATGACGGAGTTCCATC
GTATGATCTCTTGCCATGTCCAAAGGACTTTTATTGCACGGATGGCTTTT
ACACTTGCTATCAAAATGCTAATCCGGTTTGCAAAACAGAGGAGGACACT
TCCACCACCGAGATCCAGACAACCAGTACAACCACTCCTAGCCCCATTAC
CACGACAACCACTAAGAACCCAACTACCACTGCTACCCCAATTACCACAA
CAACCACTGAGATCACGACTACAGAAGCTCCGTGGAATGCCGACGATATC
TGTCAGCAATACACTAAAAACACCTTTTTCGAAAACGAAGATGATCCCAC
CTGCACCACTTTTATAACCTGTACAGTTGATAGCGACGGAACGCATTCGA
CAAAAGTCACTTCATGCAAGGCTAATCAGTATTTCAGTACCAGCTTAAAG
GTTTGTACCGCCACAAAGCCGGATGGATGCGTGGAGACGACAACCACTAT
AGCCACCACTACCCCAACCACCACCACCGTGACCACAACAGCGGCGAGTA
CCACCACAGCGGAACCCTGGAGTGCGGAGAAAACCTGCCTGACTGTCTCT
AAGACCACTTTGTTTCAAAACCAAGACGACCCCACCTGCACCACGTACCT
ATATTGTTATTTTATCAATGGATCGGCAACAGCTTTGATAAAGAACTGTA
AGACCAACCAATATTTTGATGCTTCCTTGAAATCGTGCAGCGAAAACAAA
CCGGATTATTGCACCTAAAAGCTTTCTAGACCAT
BS27886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42494-RC | 852 | CG42494-PC | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG42494-RB | 852 | CG42494-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG42494-RA | 852 | CG42494-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42494-RC | 1205 | CG42494-RC | 277..1128 | 17..868 | 4260 | 100 | Plus |
| CG42494-RB | 1337 | CG42494-RB | 409..1260 | 17..868 | 4260 | 100 | Plus |
| CG42494-RA | 937 | CG42494-RA | 9..860 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3185633..3185952 | 140..459 | 1600 | 100 | Plus |
| 3L | 28110227 | 3L | 3186012..3186299 | 460..747 | 1440 | 100 | Plus |
| 3L | 28110227 | 3L | 3186349..3186472 | 745..868 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 3185480..3185578 | 43..141 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:47:52 has no hits.
BS27886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:14 Download gff for
BS27886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RB | 409..1258 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:08 Download gff for
BS27886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RA | 9..858 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:36 Download gff for
BS27886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RA | 9..858 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:36 Download gff for
BS27886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3185396..3185422 | 17..43 | 100 | -> | Plus |
| 3L | 3185481..3185577 | 44..140 | 100 | -> | Plus |
| 3L | 3186349..3186470 | 745..866 | 100 | | Plus |
| 3L | 3185634..3185952 | 141..459 | 100 | -> | Plus |
| 3L | 3186012..3186296 | 460..744 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:08 Download gff for
BS27886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3185396..3185422 | 17..43 | 100 | -> | Plus |
| arm_3L | 3185481..3185577 | 44..140 | 100 | -> | Plus |
| arm_3L | 3185634..3185952 | 141..459 | 100 | -> | Plus |
| arm_3L | 3186012..3186296 | 460..744 | 100 | -> | Plus |
| arm_3L | 3186349..3186470 | 745..866 | 100 | | Plus |
BS27886.pep Sequence
Translation from 16 to 867
> BS27886.pep
MWLKALVLLLSIRYLAATCNVCQSDSNVACHSETTFSICYDGVPSYDLLP
CPKDFYCTDGFYTCYQNANPVCKTEEDTSTTEIQTTSTTTPSPITTTTTK
NPTTTATPITTTTTEITTTEAPWNADDICQQYTKNTFFENEDDPTCTTFI
TCTVDSDGTHSTKVTSCKANQYFSTSLKVCTATKPDGCVETTTTIATTTP
TTTTVTTTAASTTTAEPWSAEKTCLTVSKTTLFQNQDDPTCTTYLYCYFI
NGSATALIKNCKTNQYFDASLKSCSENKPDYCT*
BS27886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42494-PC | 283 | CG42494-PC | 1..283 | 1..283 | 1546 | 100 | Plus |
| CG42494-PB | 283 | CG42494-PB | 1..283 | 1..283 | 1546 | 100 | Plus |
| CG42494-PA | 283 | CG42494-PA | 1..283 | 1..283 | 1546 | 100 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 571..750 | 63..242 | 255 | 37.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 236..410 | 63..243 | 252 | 37.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 91..317 | 11..243 | 247 | 33.3 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 290..459 | 74..243 | 247 | 37.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 603..769 | 74..242 | 247 | 37.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 263..436 | 63..242 | 246 | 36.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 356..515 | 74..243 | 246 | 38.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 211..374 | 74..243 | 245 | 38.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 354..543 | 63..242 | 244 | 36.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 464..635 | 74..243 | 244 | 38.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 489..662 | 63..243 | 244 | 35.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 187..350 | 74..243 | 242 | 39.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 409..578 | 74..243 | 242 | 38.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 525..684 | 74..243 | 242 | 38.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 238..404 | 74..247 | 241 | 38.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 430..610 | 63..243 | 240 | 35.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 459..627 | 63..243 | 240 | 36.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 205..361 | 74..243 | 239 | 39.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 323..479 | 74..243 | 238 | 38.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 172..338 | 74..243 | 237 | 37.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 573..766 | 74..279 | 237 | 35.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 329..496 | 74..243 | 236 | 37.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 537..715 | 63..243 | 236 | 36.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 305..469 | 74..243 | 234 | 38.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 196..365 | 74..243 | 233 | 37.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 304..467 | 74..243 | 233 | 37.6 | Plus |
| CG32284-PA | 102 | CG32284-PA | 28..96 | 215..283 | 232 | 55.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 317..488 | 63..243 | 231 | 36.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 520..698 | 78..243 | 231 | 36.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 564..726 | 74..242 | 231 | 37.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 109..289 | 64..247 | 230 | 36.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 443..599 | 74..247 | 229 | 38.5 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 387..549 | 74..243 | 228 | 37.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 434..622 | 63..243 | 225 | 34.4 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 199..382 | 74..247 | 219 | 34.8 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 473..654 | 74..243 | 218 | 35.7 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 382..571 | 57..243 | 217 | 34.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 102..265 | 87..275 | 172 | 31.1 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 656..800 | 57..217 | 155 | 30.4 | Plus |
