BS27888.complete Sequence
3764 bp assembled on 2013-01-22
GenBank Submission: KX806432
> BS27888.complete
GAAGTTATCAGTCGACATGCGTTTCAAACTGTTTGTGGTTTGTGCGCTGG
CCTGCGGGTTTATGGCCTTTGTCCTGGCTAACGAGAATATATCGACGGAG
GAGTTCGAGGATCAAATAATCAATGCAGTTCCGGAGCCGGTCAAGGTGAC
TAAGCCCAAAGCTCAGGCGGAATTCGTTGAGGTTCCAAAGGCCACGCCCG
CTCCCAAAAAAGCGGAAGCGGACAACCCGAAAACCAAACCACTGGCCCTG
CAGAAGCCCACTCTGATTCCCGTGGTGCATGTCAGCAGTCGGGGAACAGA
TGATATCCTCACCGTCGCGGGACTGAAGCCCGAGAAAATGTTCGGAGCCC
TCATCATGCCAAATGACTATTTGGGGGAGCTGTACGACGTGGACAACAGC
GGCTACAATTGGGATCCCAATAACAATGTCGCCCCGCCGACCACATACTC
CACGGCAGCCGGAGGATACACCATAACCGCCGCCCGTCTTGCGGAGCTCA
GGAGCAACTTTATGTACTGGTACTTCGACAAGGACATGTACGGAGGACGT
GGCGACTACCAGTTCGACATCCATGCCTCCATGACGCAGCTGCACAAGAA
TCTGAACTTCCAGCTGCCCTTCTACGGCTTCCGATTCAACTACACCAGGC
TTTCCCTCAACGGCTACTTGGAGTTCTCGGATCCGCCAGAGTACCTAACT
TACCCCCTGGTCTTTCCGATCAAGGACTGGCCCGCCAAACGCGATCCCTC
CTTCATGGGCATCTTCTTCAGCAAGTGCCGTGTAGGACGAATTTATCCAT
CGGATATTGACCAGCGGACGCCCGGTGTTTACTTCCGAGTGGAACGTGAT
CTGATGGGACGTACGGACCGATTCGGCGTGGAGGTGCGGGAACGCACCAT
GTGGGACATCCGTCAGGGAGTCGTGGGCGCCGATACCTTCATCCCCAAGC
ACGTGGTGATCGCCACCTGGAAGAACGTCTCCTTCGCCGGTGGCATCGAC
AACTCCCTCTACACGACAAACACCTTCCAAATGGTCCTGGCCACTGACGA
GGTCTACACCTATATTATTTTCAACTATGCCGTTCTGAACTGGCTTTCTC
ATACTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGTGTTCCTGCA
TATGTCGGATTCAATGCCGGTAATGGAACCCAGGCGTACGAGTACAATCC
CTACAGTCAGAACATGGTGATTCGCGACCTGGCCAACAGAGGTTGGGCCA
ACGGATTCCCGGGTCGCCACATTTTCCGCGTGGACGAGCAGATTCTAATT
GGCTCCTGCAACAAGGATATCGATGCTGCTCTGCTACCTCTTACCTTTGC
CCCCGAGTCTGGTAATATGCTGGGTGGTCAAGTCGTCAATATCACTGGAC
CCTGCTTTGATCCGGCCATCAGGGTGACGTGCCACTTCGATACGGAGTCC
GTGCTGGGAACCTATGTGGATCGGAACCGCGTAATCTGTGTGCAGCCCTA
CCTGAAGGCCGAGGGCTATATCCGATTCCAGATCTCCGTGGGAACCCAGA
GGTTCAAGTGGCGCGGAAAGTACTTCGTGGAGACCCCGGCTGCCGCCACC
GAGAAGATCTTCTTCACCACCGATGATGTGCACAAGAAGAACCCCGCCGA
GATCCGCATCACCTGGAACCAGTACAATTTGACCTCGAACGCCAATGCCA
ACGTGATGATCTCGCTGTGGGGCTACCGGGAGACCAAGATCGAGCCGCAA
CTGGAGTACATCGATGTGATCGAGGCCTCCTACTCGAATAGCGGCAGCTA
CGTTATCACGCCCTCGAACTACATCAACCGCAACAACATCAACCGGGACA
TGCAGTTCGGATTCCTCCAGATCAATCTCACTCAGCCCGATCAATACTCA
GGATTGGCCATCAGTCCGGTTCTCTGGTCCCGGCCGATTCCTCTGGCCTG
GTATATGGCGCCCCAGTGGGAGCGGCAGCATGGAAAGCGATGGGCGCGGG
CTCTCTGCGATAATTGGATTCGCGCCGACCGATTCCTCAGGAACTTTGCG
GCCGACCTGCCACTTTGCCCCTGCACCTTGGACCAGGCTGTCCTGGACAA
AGGACGCTTCCGCCCTGACCGCGAGTGCGACAAGGACTCGAACCCTAGCT
GCCTGCGTCATCGCGGGGCCATCCACTGCGTGGTCAGTGGAACGCCAGTT
GCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGTTATGGCTTCCTGAT
GCTGACCTACGACCAAATGTGGGGCTCTCGTCCCCGTCGCGTCCACAACC
TGGGCAAGATGCCCTGGAACGAGGCCAGCAAGGTGCCCTCGCTGTCCATG
TGGTTCCACGACATGCGCCCCTTCTACTCCTGCTGCTACTGGCAGGAGGA
GCAGGCGGTGGGCTGCGAAACCTACCGCTTCGAGCGTCGTCCCTCGCAGG
ATTGTGTGGCCTATCAGGCGCCTGGAATCGCAGGTGTTTTCGGCGATCCC
CACTTTGTGACCTTTGATGGCACGGCTTACACATTCAACGGACTGGGAGA
ATTCGTCCTGGCACGCAGCGTGGATGAGAGTAATAAGTTTGAGGTCCAAG
GACGATTCGAGCAGCTGCCAGTTAATTATTATGGCGAGGTGAAGGCCACC
CAGTTGACAGCGGTGGCCATGCGGGGAAACACCACCACGACGATTGAGGT
CCGTCTGCGCCCTCTGCACGCCAGATGGCGCTATCGCCTGGATGTCCTGG
CCGATGGACGAAGGGTTTACTTCGATCGTGAGAGTCTGAAGTTCCAGCAC
TTCGACGGTGTTACCGTGTATACCCCGACTTACCTGCTCAATCAGTCGCA
GGTGGTGGTGCAATTCGATGCTGGTATCGGAGTGGAGGTGGTAGAGAACG
AAGGATACATGACCGGTCGCGTCTTCCTGCCATGGAAGTTTATAAACAAA
ACCGCGGGACTCTTTGGCAACTGGAGTTTTAATAAACTAGACGACTTTAT
GCTGCCCAATGGACAAGTGGCCCAACTCAATCTTAACGATCTGCGCAGCA
TTCATACCAACTTTGGAATCAAATGGATGCTCACGGATCGCGAGGTTCCT
GGAGTGGGAGCCGCTCTATTTAAACGAGAATTTGGACGAATGTCTGGTTA
CTATGCGAATGCCACCTTCCAGCCGAATTATGTCCTAGATCCTGCGGACT
TCCTGCCAGCGAATCGCTCTTACGATCTTGAAAGAGCTGAAGAACTTTGT
GGAGAGTGTATGCAGTGCCAGTACGATTACGCAATGACTTTGAATAGAGA
CTTGGCACACTTTACCAAAAATTACTACGATACTATAGTCAATATGCAGG
CGGAAAATGCAGTGCGTGTGGTATCCTGTGGAGTTCTGCAGACTCCTCGT
TTTGGTCGAAAGCTGAGCTTTGACTTTATGCCTGGTGCGAAAGTATCCTT
TGAGTGTAACGAGGGCTTTATCCTGATTGGAGATCAACGTCGTGAGTGCT
TGTCGAACGGTCTGTGGAACATTCCGGAATACGGATATACCGAATGTCTA
CGACATGAGGAGCGTTCCGCGCGGGTGGCTAGCATTTCGCTGGGCATGGT
GCTGCTCATCCTGATTCCCTGCCTTTTACTTCTCGTCTGCGGGGCGAGTT
ATTGGATTCGTGAACGAATCGCCAGGGAGGAGGAGGAGGCGGCCCAGGCT
CTGTTGCCAAAATCCAAGTGGCAGCAGTCGAAACAACATGTAATTTGAAA
GCTTTCTAGACCAT
BS27888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mesh-RE | 3732 | CG31004-PE | 1..3732 | 17..3748 | 18660 | 100 | Plus |
| mesh-RC | 3732 | CG31004-PC | 1..3732 | 17..3748 | 18660 | 100 | Plus |
| mesh-RD | 4365 | CG31004-PD | 1..3536 | 17..3552 | 17680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mesh-RE | 3949 | CG31004-RE | 41..3774 | 15..3748 | 18670 | 100 | Plus |
| mesh-RC | 4008 | CG31004-RC | 100..3833 | 15..3748 | 18670 | 100 | Plus |
| mesh-RD | 4803 | CG31004-RD | 100..3637 | 15..3552 | 17690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31181785..31182529 | 2944..2200 | 3725 | 100 | Minus |
| 3R | 32079331 | 3R | 31184217..31184813 | 1918..1322 | 2985 | 100 | Minus |
| 3R | 32079331 | 3R | 31181299..31181718 | 3364..2945 | 2100 | 100 | Minus |
| 3R | 32079331 | 3R | 31195058..31195456 | 413..15 | 1995 | 100 | Minus |
| 3R | 32079331 | 3R | 31191599..31191835 | 649..413 | 1185 | 100 | Minus |
| 3R | 32079331 | 3R | 31178564..31178760 | 3748..3552 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 31181033..31181221 | 3552..3364 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 31191322..31191510 | 837..649 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 31185856..31186034 | 1015..837 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 31184926..31185094 | 1322..1154 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 31182615..31182776 | 2199..2038 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 31185644..31185784 | 1155..1015 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 31182949..31183072 | 2041..1918 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:11:17 has no hits.
BS27888.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:52 Download gff for
BS27888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31004-RC | 102..3832 | 17..3747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:47 Download gff for
BS27888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mesh-RC | 102..3832 | 17..3747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:54 Download gff for
BS27888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mesh-RC | 102..3832 | 17..3747 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:54 Download gff for
BS27888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31181034..31181221 | 3364..3551 | 100 | <- | Minus |
| 3R | 31191322..31191509 | 650..837 | 100 | <- | Minus |
| 3R | 31191599..31191834 | 414..649 | 100 | <- | Minus |
| 3R | 31195058..31195454 | 17..413 | 100 | | Minus |
| 3R | 31178565..31178760 | 3552..3747 | 100 | <- | Minus |
| 3R | 31181300..31181718 | 2945..3363 | 100 | <- | Minus |
| 3R | 31181785..31182529 | 2200..2944 | 100 | <- | Minus |
| 3R | 31182615..31182773 | 2041..2199 | 100 | <- | Minus |
| 3R | 31182950..31183072 | 1918..2040 | 100 | <- | Minus |
| 3R | 31184218..31184812 | 1323..1917 | 100 | <- | Minus |
| 3R | 31184926..31185094 | 1154..1322 | 100 | <- | Minus |
| 3R | 31185646..31185783 | 1016..1153 | 100 | <- | Minus |
| 3R | 31185856..31186033 | 838..1015 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:47 Download gff for
BS27888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27004287..27004482 | 3552..3747 | 100 | <- | Minus |
| arm_3R | 27006756..27006943 | 3364..3551 | 100 | <- | Minus |
| arm_3R | 27007022..27007440 | 2945..3363 | 100 | <- | Minus |
| arm_3R | 27007507..27008251 | 2200..2944 | 100 | <- | Minus |
| arm_3R | 27008337..27008495 | 2041..2199 | 100 | <- | Minus |
| arm_3R | 27008672..27008794 | 1918..2040 | 100 | <- | Minus |
| arm_3R | 27009940..27010534 | 1323..1917 | 100 | <- | Minus |
| arm_3R | 27010648..27010816 | 1154..1322 | 100 | <- | Minus |
| arm_3R | 27011368..27011505 | 1016..1153 | 100 | <- | Minus |
| arm_3R | 27011578..27011755 | 838..1015 | 100 | <- | Minus |
| arm_3R | 27017044..27017231 | 650..837 | 100 | <- | Minus |
| arm_3R | 27017321..27017556 | 414..649 | 100 | <- | Minus |
| arm_3R | 27020780..27021176 | 17..413 | 100 | | Minus |
BS27888.pep Sequence
Translation from 16 to 3747
> BS27888.pep
MRFKLFVVCALACGFMAFVLANENISTEEFEDQIINAVPEPVKVTKPKAQ
AEFVEVPKATPAPKKAEADNPKTKPLALQKPTLIPVVHVSSRGTDDILTV
AGLKPEKMFGALIMPNDYLGELYDVDNSGYNWDPNNNVAPPTTYSTAAGG
YTITAARLAELRSNFMYWYFDKDMYGGRGDYQFDIHASMTQLHKNLNFQL
PFYGFRFNYTRLSLNGYLEFSDPPEYLTYPLVFPIKDWPAKRDPSFMGIF
FSKCRVGRIYPSDIDQRTPGVYFRVERDLMGRTDRFGVEVRERTMWDIRQ
GVVGADTFIPKHVVIATWKNVSFAGGIDNSLYTTNTFQMVLATDEVYTYI
IFNYAVLNWLSHTEAGGDTTKGEGGVPAYVGFNAGNGTQAYEYNPYSQNM
VIRDLANRGWANGFPGRHIFRVDEQILIGSCNKDIDAALLPLTFAPESGN
MLGGQVVNITGPCFDPAIRVTCHFDTESVLGTYVDRNRVICVQPYLKAEG
YIRFQISVGTQRFKWRGKYFVETPAAATEKIFFTTDDVHKKNPAEIRITW
NQYNLTSNANANVMISLWGYRETKIEPQLEYIDVIEASYSNSGSYVITPS
NYINRNNINRDMQFGFLQINLTQPDQYSGLAISPVLWSRPIPLAWYMAPQ
WERQHGKRWARALCDNWIRADRFLRNFAADLPLCPCTLDQAVLDKGRFRP
DRECDKDSNPSCLRHRGAIHCVVSGTPVAQGAEQQCCYDRYGFLMLTYDQ
MWGSRPRRVHNLGKMPWNEASKVPSLSMWFHDMRPFYSCCYWQEEQAVGC
ETYRFERRPSQDCVAYQAPGIAGVFGDPHFVTFDGTAYTFNGLGEFVLAR
SVDESNKFEVQGRFEQLPVNYYGEVKATQLTAVAMRGNTTTTIEVRLRPL
HARWRYRLDVLADGRRVYFDRESLKFQHFDGVTVYTPTYLLNQSQVVVQF
DAGIGVEVVENEGYMTGRVFLPWKFINKTAGLFGNWSFNKLDDFMLPNGQ
VAQLNLNDLRSIHTNFGIKWMLTDREVPGVGAALFKREFGRMSGYYANAT
FQPNYVLDPADFLPANRSYDLERAEELCGECMQCQYDYAMTLNRDLAHFT
KNYYDTIVNMQAENAVRVVSCGVLQTPRFGRKLSFDFMPGAKVSFECNEG
FILIGDQRRECLSNGLWNIPEYGYTECLRHEERSARVASISLGMVLLILI
PCLLLLVCGASYWIRERIAREEEEAAQALLPKSKWQQSKQHVI*
BS27888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mesh-PE | 1243 | CG31004-PE | 1..1243 | 1..1243 | 6712 | 100 | Plus |
| mesh-PC | 1243 | CG31004-PC | 1..1243 | 1..1243 | 6712 | 100 | Plus |
| mesh-PD | 1454 | CG31004-PD | 1..1233 | 1..1234 | 6475 | 96.9 | Plus |
| mesh-PB | 1431 | CG31004-PB | 1..1233 | 1..1234 | 6475 | 96.9 | Plus |
| mesh-PA | 1431 | CG31004-PA | 1..1233 | 1..1234 | 6475 | 96.9 | Plus |
