Clone BS27889 Report

Search the DGRC for BS27889

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:278
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG17167-RC
Protein status:BS27889.pep: full length peptide match
Sequenced Size:1598

Clone Sequence Records

BS27889.complete Sequence

1598 bp assembled on 2013-10-14

GenBank Submission: KX802405

> BS27889.complete
GAAGTTATCAGTCGACATGGTCAAAACTGCCACCTTTTGGCGTTGCCTTT
TCTTTACATTATGTGGAAGCTTTTTGACGGTTACTCAGGCCAAAGCAACT
AGCAACGCAAGCAGTTTTTTGGAGGTGTCGCTGCGCTATTTTGATGAGCA
GCTTCTGCTGGACATCCTGCCACGCGCTCAGTGTCCTGGCGAGGATGAAG
GATCTCCGATGGACGAGTTCGCCGACCTGTTTACGGTGGATCAACTTCGC
CAGGGATGGGTGGTGCTGCACGTCTTCGCTGCGGTTTACTTCTTTATCCT
GCTGGCCATCATTTGCAACGACTACTTCCTGCCGACTGTGGAGTGCATCT
GCGAGGACTTGCACCTTTCGAAGGACGTGGCAGCGGCCACTTTCATGGCT
ACCGCCACCTCCATGCCCGAATTCTTTACGAACACGATCAGCACGTTGAT
TCTGGAGTCAGATATGGGCCTGGGCACGATTATCGGCTCGTTAATGTTCA
ACACATTGGGAGTGGCCGGCCTAGCTGCGCTCGCCATCGATAAGCCGGTG
CAACTGGACTGGTGGCCCATAGCTCGCGACTGCTTTATTTATGTCTTCAA
CACGATTATCCTGCTGGTCTTGGCCTGGAGTGGAAGCATTAGTTTCACTG
AGTCCTGCATCATGATGGGATTCCTCATCCTTTACTACCTTATCACGTTT
AACAACAACAAGTTTATGCCCGCCATCCGGGTGTTTATCGAGGATCGTAT
GAACTGCTGCTTCTCCACGCGATATGATCTAACGGAGCCTCCAGAGAACA
GTGCCAAGGCGCAGCTTCCACTCAAAAAAGATCCTCTGTCCGGCGATGGC
CTCTTTGTTCTTAATCTTCCCGAAAACACCTCGTCCATGTCTTCCACCGC
CAACCTCACACGTAACAAGCATCTTAACGACGAGGACGACGTCGCAGACG
TAGTGCCCGGGAGCATATACGCTTACCCGCGTGACGCATCCGGTTGGATG
CAATTCTGGTGGATCTTCGTCTTCCCCATTAAGGTCACGCTATCCCTATT
GATCCCGCACCCGATGAAGTACCGCCGACTGTACCCATTATCTTTTATCA
TGTGCATCTTGTGCATTGGCGGAAACGCCTACCTTATTGTCTGGATGCTG
ACTGCCTTTGGTGTGGCCATTCATGTGCCTACCATTGTGATGGGTCTGAC
CTTCTTGGCTGCTGGCTCTACCATGCCGGAAGCCGTCTCCAGTCTTATTT
CCCTTAGAAATGGGGAAAATGGCATTGGAGTTTCTAATTCGTTGGGCGCT
AACTCCTTGGCCATCTTGCTATCCCTTGGAGTGCCTTGGTTCATCAAGAA
TTGTATACACTACGGAACTGGGGAGCCCCAGCAGGTTGGCACCCAGGGCA
TCGAGTATAACATCCTGATCTTGATCATATCCACTATGGCGCTGTTCATA
ATCCTCAGCTTCAGTGGATATCGGCTTACGAAGCGAGTGGGCGTAGCCCT
CTTCACGGTGTACGGAGTCTTTATTGTTCTACAGATCCTCATCGAGATGA
ATGTATTCTTTCCCAGAGATTGCAGCAGCTAGAAGCTTTCTAGACCAT

BS27889.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17167-RC 1566 CG17167-PC 1..1566 17..1582 7815 99.9 Plus
CG17167-RD 1569 CG17167-PD 1..1569 17..1582 7750 99.7 Plus
CG17167-RF 1503 CG17167-PF 15..1503 94..1582 7430 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17167-RC 2503 CG17167-RC 294..1863 13..1582 7820 99.9 Plus
CG17167-RD 2506 CG17167-RD 294..1866 13..1582 7755 99.7 Plus
CG17167-RF 2597 CG17167-RF 90..1578 94..1582 7430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23078770..23079109 924..1263 1700 100 Plus
X 23542271 X 23079805..23080125 1262..1582 1605 100 Plus
X 23542271 X 23074762..23075070 236..544 1545 100 Plus
X 23542271 X 23077856..23078089 543..776 1155 99.6 Plus
X 23542271 X 23078159..23078310 776..927 745 99.3 Plus
X 23542271 X 23073105..23073247 94..236 715 100 Plus
X 23542271 X 23068594..23068676 13..95 400 98.8 Plus
Blast to na_te.dros performed on 2014-11-28 14:08:04 has no hits.

BS27889.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:30:16 Download gff for BS27889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17167-RC 298..1863 17..1582 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:54 Download gff for BS27889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17167-RC 298..1863 17..1582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:54 Download gff for BS27889.complete
Subject Subject Range Query Range Percent Splice Strand
X 23078770..23079108 924..1262 100 -> Plus
X 23068598..23068676 17..95 100 -> Plus
X 23073107..23073247 96..236 100 -> Plus
X 23074763..23075070 237..544 100 -> Plus
X 23077858..23078089 545..776 99 -> Plus
X 23078160..23078306 777..923 100 -> Plus
X 23079806..23080125 1263..1582 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:30:16 Download gff for BS27889.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 47416..47494 17..95 100 -> Plus
XHet 51925..52065 96..236 100 -> Plus
XHet 53581..53888 237..544 100 -> Plus
XHet 56676..56907 545..776 99 -> Plus
XHet 56978..57124 777..923 100 -> Plus
XHet 57588..57926 924..1262 100 -> Plus
XHet 58624..58943 1263..1582 100   Plus

BS27889.pep Sequence

Translation from 16 to 1581

> BS27889.pep
MVKTATFWRCLFFTLCGSFLTVTQAKATSNASSFLEVSLRYFDEQLLLDI
LPRAQCPGEDEGSPMDEFADLFTVDQLRQGWVVLHVFAAVYFFILLAIIC
NDYFLPTVECICEDLHLSKDVAAATFMATATSMPEFFTNTISTLILESDM
GLGTIIGSLMFNTLGVAGLAALAIDKPVQLDWWPIARDCFIYVFNTIILL
VLAWSGSISFTESCIMMGFLILYYLITFNNNKFMPAIRVFIEDRMNCCFS
TRYDLTEPPENSAKAQLPLKKDPLSGDGLFVLNLPENTSSMSSTANLTRN
KHLNDEDDVADVVPGSIYAYPRDASGWMQFWWIFVFPIKVTLSLLIPHPM
KYRRLYPLSFIMCILCIGGNAYLIVWMLTAFGVAIHVPTIVMGLTFLAAG
STMPEAVSSLISLRNGENGIGVSNSLGANSLAILLSLGVPWFIKNCIHYG
TGEPQQVGTQGIEYNILILIISTMALFIILSFSGYRLTKRVGVALFTVYG
VFIVLQILIEMNVFFPRDCSS*

BS27889.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17167-PC 521 CG17167-PC 1..521 1..521 2714 100 Plus
CG17167-PD 522 CG17167-PD 1..522 1..521 2702 99.8 Plus
CG17167-PF 500 CG17167-PF 6..500 27..521 2573 100 Plus
CG17167-PE 409 CG17167-PE 1..303 1..302 1565 99.7 Plus
zyd-PG 499 CG2893-PG 11..489 65..515 776 35.4 Plus
CG17167-PE 409 CG17167-PE 285..409 403..521 541 88.8 Plus