BS27901.complete Sequence
1499 bp assembled on 2011-09-30
GenBank Submission: KX804071
> BS27901.complete
GAAGTTATCAGTCGACATGTCTCGTGTGCTTTCGTTAGCTCTGATCGGAT
TAGTGCTCTGCCAGGGTTTAGCACAACTGCTGGATAAAAAGTGTCACGAT
CCAAAAACTTCAGAGAATATAAATTTCAATCATGGTGCAACTGAAACCGC
ACCCTGGATGGCAAGCATATACAAGAATAACCAATTTATTTGCGACGGAA
CGCTTGTTCACAAATTGTTCGTCCTAACGGCCGCGAGTTGCATATCGAAA
GATAGTCAACTGTACGTGCTTTTCGGGATGTACAACCAATACAGGGATGC
ATCACAATTCTTTAACAACGAACAATATGGAGTGGCGGTTGCTTTGCAAC
ATTCCAATTTCCGCCCAAACAATGGCGTCAACGATATAGGCCTTTTAAGA
CTTTACGGTGAAGTGACGCATTATGCCCACATCCGCCCGATTTGTATAAT
ATTAGATCATGTGGTAAAGTCAGCACCATTTGAAAGGTTTGAGGGCTTTG
GATGGCAACAACAAGGAACAGAAGCATCCAGCCAAGTGAGGCAGACCGTA
TATCTCTCTCAGAAAAAACCATTTGAGTGCCATCGAAATGGTCAGTTGTT
GCCCATTAACGAGGGGCAATTCTGCGCCGGCAATAGGGATAGAAGTTTCT
GTAGAAGTAACTCCGGCAGTCCGTTGACAGCTGATTTCACCTACGGCGTA
AAAAATATCACCGTTCAGGTTGGATTGGTGAGCTACGGCAGCGAGTTGTG
CAGCCCAACTAGCGTCTATACAGATGTTGTCGCCTTCAAGGACTGGATAT
ATAATACTGTCAGGAATTTCGAAACTAAAGGTGATCAGGTTGTGTACGAA
GAATGCAGGAGCAACTGGGCGGAGGATGTCCTTGTTCGCCTGTGGGAGGT
ATCTCTGCATCAGAATACTTTCTCTGGCGTGCTTATTACGAATAGATTTG
TCTTGACGGTGGCCAGTGCTTTCCCTAACATTCCTTTAGTAATGAAGGTG
GAAACCAAATATCTCAAAAGTTTCGACGTGGAATCGATCCATACCCATCC
CAGATTCACGCATTCATCAATGGACAACAATATTGCATTGCTTAAACTAG
CTCACGATGTGCCAAACTCAGATCTTGTCAAGCCAATCTGCATTGTCCCA
AGTCCCAAATTGCCAAGGATGTTAACTACACTTGTGGATGAGACCACCAA
TGATTTCAGAGGCGTCAGGAATGTTACTTTGAACGCCATCAATCACATTG
AATGCGCCAGAAGAATTGGGAAACCACTTAAAAGTAACCAATTTTGTGTC
GCACAACCTATTGATTTTAAAGTTCAAGCGCCAGGCTCAATCATAGGCAC
ATATAGAAATATCGGCGATGGTAATAGGTACTATCTTTTTGGCCTAATGA
GCTACAGTAAGGACGGCATGGTGGTCTACACCTATATACAAAGCTATTTG
GATTGGATAATGGATAAAGTTTATTATAATTAAAAGCTTTCTAGACCAT
BS27901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33465-RC | 1467 | CG33465-PC | 1..1467 | 17..1483 | 7335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33465-RC | 1610 | CG33465-RC | 30..1497 | 17..1484 | 7340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15819948..15820468 | 945..425 | 2605 | 100 | Minus |
| 2R | 25286936 | 2R | 15819227..15819591 | 1484..1120 | 1825 | 100 | Minus |
| 2R | 25286936 | 2R | 15820887..15821085 | 215..17 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 15820557..15820720 | 425..262 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 15819645..15819772 | 1121..994 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 15819843..15819892 | 994..945 | 250 | 100 | Minus |
| 2R | 25286936 | 2R | 15820769..15820817 | 264..216 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:34:23 has no hits.
BS27901.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:35 Download gff for
BS27901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 11..1475 | 17..1481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:12 Download gff for
BS27901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 30..1494 | 17..1481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:23 Download gff for
BS27901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 30..1494 | 17..1481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:23 Download gff for
BS27901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15820557..15820720 | 262..425 | 100 | <- | Minus |
| 2R | 15820772..15820817 | 216..261 | 100 | <- | Minus |
| 2R | 15820887..15821085 | 17..215 | 100 | | Minus |
| 2R | 15819645..15819772 | 994..1121 | 100 | <- | Minus |
| 2R | 15819844..15819892 | 945..993 | 100 | <- | Minus |
| 2R | 15819949..15820467 | 426..944 | 100 | <- | Minus |
| 2R | 15819230..15819589 | 1122..1481 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:12 Download gff for
BS27901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11708392..11708590 | 17..215 | 100 | | Minus |
| arm_2R | 11708062..11708225 | 262..425 | 100 | <- | Minus |
| arm_2R | 11708277..11708322 | 216..261 | 100 | <- | Minus |
| arm_2R | 11706735..11707094 | 1122..1481 | 100 | <- | Minus |
| arm_2R | 11707150..11707277 | 994..1121 | 100 | <- | Minus |
| arm_2R | 11707349..11707397 | 945..993 | 100 | <- | Minus |
| arm_2R | 11707454..11707972 | 426..944 | 100 | <- | Minus |
BS27901.pep Sequence
Translation from 16 to 1482
> BS27901.pep
MSRVLSLALIGLVLCQGLAQLLDKKCHDPKTSENINFNHGATETAPWMAS
IYKNNQFICDGTLVHKLFVLTAASCISKDSQLYVLFGMYNQYRDASQFFN
NEQYGVAVALQHSNFRPNNGVNDIGLLRLYGEVTHYAHIRPICIILDHVV
KSAPFERFEGFGWQQQGTEASSQVRQTVYLSQKKPFECHRNGQLLPINEG
QFCAGNRDRSFCRSNSGSPLTADFTYGVKNITVQVGLVSYGSELCSPTSV
YTDVVAFKDWIYNTVRNFETKGDQVVYEECRSNWAEDVLVRLWEVSLHQN
TFSGVLITNRFVLTVASAFPNIPLVMKVETKYLKSFDVESIHTHPRFTHS
SMDNNIALLKLAHDVPNSDLVKPICIVPSPKLPRMLTTLVDETTNDFRGV
RNVTLNAINHIECARRIGKPLKSNQFCVAQPIDFKVQAPGSIIGTYRNIG
DGNRYYLFGLMSYSKDGMVVYTYIQSYLDWIMDKVYYN*
BS27901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33465-PC | 488 | CG33465-PC | 1..488 | 1..488 | 2593 | 100 | Plus |
| CG43742-PB | 474 | CG43742-PB | 6..467 | 6..481 | 671 | 36.2 | Plus |
| CG30187-PD | 451 | CG30187-PD | 1..451 | 48..488 | 477 | 30.9 | Plus |
| CG30187-PC | 440 | CG30187-PC | 1..440 | 48..488 | 446 | 29.9 | Plus |
| CG43110-PA | 483 | CG43110-PA | 10..482 | 9..488 | 430 | 26.9 | Plus |
