BS27904.complete Sequence
893 bp assembled on 2011-09-30
GenBank Submission: KX805811
> BS27904.complete
GAAGTTATCAGTCGACATGGTAAAAAATGGGCAATCGAAACGGCAGCCAT
GGGTGAAGAACCTGTACTCCAACCGGGAATATCCGGACAACTACACGGAT
GCCAGCTTTCTGAAGGATCTGCGCACGAATCTACATTGTAGAATATACAC
GTTCGGCGAAGCAATTGCCGGTATTACAGTGCTTAATAATCAGATCTCCT
GCATCACCGGCTTCCTAATACTCTACCAACTTATGCTCAGCGACAGCGTG
TCGCCCACCACGATCCTGGTACCCAGTTGCGGGATCACAGGCATTGGATA
CCTGTGCTACCGAGGAAGGAGTCTCAGCTGGGCCCTGCTGGGCGAGGATT
CCAAAACCCTGGTCACAGTGGTCCTCTTCGGCTACTTATTCTCACCGATG
CTGCACACCCTAACGCAGGCCATCAGCACGGACACCATATACACAATGAC
CTTCTTTGTCCTTCTGGGCAACCTGATATTTGGACACTATGGATTGGATG
TAGCCATGGTCTCTAAGGCCGTCTCGTTGAATGCCGCCATATTTGGAGCA
ATTTGCTTAGCCTCCCGCCTGCCGACTTCGTATCACGCCTTCGTGCTCCT
TGTCGAGGCTGCCGTCTTTTTCGTCCTTTATCCCATAATGACGGAAGCGA
ATTGGCATGCTGGATTCATGTTGCCTATATTTGCAATATGCTGTATGGCG
CTGTACTGTATATCGCGCCCGGTGCTCTATCTCTACGCCTCCACCACCAT
TTTCATCAACTTTGTCTGCCCGTTCATATTCGTGTGGCAGCAGCAGTACA
AGTTCAACATTCACGGGCCCTGGGACGAGGCCATCGTGGAGGAGAACACC
GAGGAGAACCTGGATGGGAACTTATAGAAGCTTTCTAGACCAT
BS27904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-C-RB | 861 | CG12077-PB | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-C-RB | 1103 | CG12077-RB | 41..901 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3318691..3319192 | 518..17 | 2510 | 100 | Minus |
| 3L | 28110227 | 3L | 3318230..3318591 | 877..516 | 1810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:35:02 has no hits.
BS27904.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:37 Download gff for
BS27904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12077-RB | 41..901 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:26 Download gff for
BS27904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-C-RB | 41..901 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:41 Download gff for
BS27904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-C-RB | 41..901 | 17..877 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:41 Download gff for
BS27904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3318230..3318589 | 518..877 | 100 | <- | Minus |
| 3L | 3318692..3319192 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:26 Download gff for
BS27904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3318230..3318589 | 518..877 | 100 | <- | Minus |
| arm_3L | 3318692..3319192 | 17..517 | 100 | | Minus |
BS27904.pep Sequence
Translation from 16 to 876
> BS27904.pep
MVKNGQSKRQPWVKNLYSNREYPDNYTDASFLKDLRTNLHCRIYTFGEAI
AGITVLNNQISCITGFLILYQLMLSDSVSPTTILVPSCGITGIGYLCYRG
RSLSWALLGEDSKTLVTVVLFGYLFSPMLHTLTQAISTDTIYTMTFFVLL
GNLIFGHYGLDVAMVSKAVSLNAAIFGAICLASRLPTSYHAFVLLVEAAV
FFVLYPIMTEANWHAGFMLPIFAICCMALYCISRPVLYLYASTTIFINFV
CPFIFVWQQQYKFNIHGPWDEAIVEENTEENLDGNL*
BS27904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-C-PB | 286 | CG12077-PB | 1..286 | 1..286 | 1511 | 100 | Plus |
