BS27907.complete Sequence
488 bp assembled on 2012-04-25
GenBank Submission: KX804160
> BS27907.complete
GAAGTTATCAGTCGACATGATGGTTAGCAAATTGTGGAACAGCTGCTTCC
CGGAGTTCACCCCGGACCATGTGCATCGACACAACTTTTACCTATGCCAG
TGGCAACGGAACACGCAGGTGCGCATCGTTTACCTGTTCTACCGATGGAT
AACGGCCATCACCTGCCTGGCGGCACTGGTCTGCTCCTTGCTGGACATTG
GGCGCACGGACGAGCACTTTGAGCACCACTATGCCAAGTGGTGGATCTAC
CTGACCCACTGGGGACTGCTCTTCTGCACAGTCCAGGCCTGGCTGGCCGC
CTGGATAGTGACCCAGGGCATGATGGTGGAGCGCGAGGACTTCGAGATTG
TGCGGCAGGCGAAGAAGAGCCGCCTGCACCACTTGTACTGGGTGCTCTAC
ACCTGTGCCACTGTCTATGCGTTCATCGTCACCATGTGCTATTGGCTACT
GGTCCACAATCCCGGTAAGTGAAAGCTTTCTAGACCAT
BS27907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43778-RC | 1992 | CG43778-PC | 1537..1992 | 17..472 | 2280 | 100 | Plus |
| CG43778-RA | 2892 | CG43778-PA | 1537..1984 | 17..464 | 2240 | 100 | Plus |
| CG43778-RD | 1356 | CG43778-PD | 1..448 | 17..464 | 2240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43778-RC | 2595 | CG43778-RC | 2027..2483 | 17..473 | 2285 | 100 | Plus |
| CG43778-RA | 6433 | CG43778-RA | 2027..2474 | 17..464 | 2240 | 100 | Plus |
| CG43778-RD | 6433 | CG43778-RD | 2027..2474 | 17..464 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13307926..13308300 | 473..99 | 1875 | 100 | Minus |
| 2L | 23513712 | 2L | 13308410..13308493 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:08:35 has no hits.
BS27907.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:23 Download gff for
BS27907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16970-RB | 2006..2460 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:48 Download gff for
BS27907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43778-RC | 2027..2481 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:04 Download gff for
BS27907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43778-RC | 2027..2481 | 17..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:04 Download gff for
BS27907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13307928..13308298 | 101..471 | 100 | <- | Minus |
| 2L | 13308410..13308493 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:48 Download gff for
BS27907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13307928..13308298 | 101..471 | 100 | <- | Minus |
| arm_2L | 13308410..13308493 | 17..100 | 100 | | Minus |
BS27907.pep Sequence
Translation from 16 to 471
> BS27907.pep
MMVSKLWNSCFPEFTPDHVHRHNFYLCQWQRNTQVRIVYLFYRWITAITC
LAALVCSLLDIGRTDEHFEHHYAKWWIYLTHWGLLFCTVQAWLAAWIVTQ
GMMVEREDFEIVRQAKKSRLHHLYWVLYTCATVYAFIVTMCYWLLVHNPG
K*
BS27907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43778-PC | 663 | CG43778-PC | 513..663 | 1..151 | 866 | 100 | Plus |
| CG43778-PD | 451 | CG43778-PD | 1..149 | 1..149 | 855 | 100 | Plus |
| CG43778-PA | 963 | CG43778-PA | 513..661 | 1..149 | 855 | 100 | Plus |
| rost-PC | 275 | CG9552-PC | 28..148 | 22..147 | 165 | 30 | Plus |
| rost-PB | 275 | CG9552-PB | 28..148 | 22..147 | 165 | 30 | Plus |
