BS27908.complete Sequence
974 bp assembled on 2011-09-30
GenBank Submission: KX802350
> BS27908.complete
GAAGTTATCAGTCGACATGAAGAAGAGCTCCACGCTGACCACGACCACGT
CGATGCCGGCGAGTCCGACGCTCTCGGCACAGACGCTCTCCGCCAGCAAG
ATCAGCCTGAACAGCAGCCGTTGCGGCTCGGCGGGATCGGGATGCGGATC
CGCATCCGGTTCGATGCGCTCCGCCTGCCAATCACCGGTGCGGCCGGGGA
GCGGATGCGTGGACGCCATCAAGGCCAAGCGCGAGGAGATCGAGATGGAC
ACGCTGCTCGAGAAGGCAAAGTTCTATACCTCCGTGTGCCTTGGTACGAC
TGCCATTTTGTCGGTGTTCACATTCCTCTTCCTGATACCCTTCGTCGTGG
ATCCCGCCATCTCAACGATCATAGCCGACTATGATCCAGTGCCGGTGACC
TGCATCGTCATCGACCATATCTACGCGGAGGGCATCAAGAATTGCAGCTG
GAGCTCCTGCCGCGAGGGCTGCACATCATCACTCACCAAGTGCCATCAGT
TGTTTGTCAACTATACGCGCATCCCGTTCAGCGAATGGGAGCGCAATCCT
CGGGACCTAGACACGGTCAACTGGGATGTGAGCTACACCAAGTTTCTGAT
CAACTCAGAGGGTTGTGGCTATCCGCCCACGACCAATTGCAGTATATTTG
CCAGGCAATATGGGTTTTCACACATCGGAGAGCCCTTCCCCTGCTTCTAC
AGCAGGGCGTATCCGGAGGTGGTCATCGGTCGGTACTCGTGGGAGAACAA
TCTGTACCACCTAATCCTTTCGCTGATCATACCGAACGTGCTCTTTGCCA
TCTCGATCGGGGTGCTCAGCTATTGGTACTGCCCCTGCTGCGAGAAGGCG
TGCAACAAATCCTCGCGGGTCTACGCCGAGAAGTTCCCGACCAAGGAAGA
GATCGTTAACTGCATGAAATGTAACACGGAAAAGTCGTTGTCCTTGAATG
TATTTTGAAAGCTTTCTAGACCAT
BS27908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh2-RB | 942 | CG15004-PB | 1..942 | 17..958 | 4710 | 100 | Plus |
| Teh2-RA | 930 | CG15004-PA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh2-RB | 2679 | CG15004-RB | 1423..2366 | 16..959 | 4720 | 100 | Plus |
| Teh2-RA | 1527 | CG15004-RA | 35..919 | 16..900 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4181522..4181802 | 296..16 | 1405 | 100 | Minus |
| 3L | 28110227 | 3L | 4180730..4180968 | 901..663 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 4181252..4181451 | 492..293 | 1000 | 100 | Minus |
| 3L | 28110227 | 3L | 4181026..4181205 | 665..486 | 885 | 99.4 | Minus |
| 3L | 28110227 | 3L | 4180297..4180355 | 959..901 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:36:31 has no hits.
BS27908.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:39 Download gff for
BS27908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh2-RB | 1424..2364 | 17..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:17:30 Download gff for
BS27908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh2-RB | 1424..2364 | 17..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:13 Download gff for
BS27908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh2-RB | 1424..2364 | 17..957 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:13 Download gff for
BS27908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4180731..4180967 | 664..900 | 100 | <- | Minus |
| 3L | 4181028..4181201 | 490..663 | 100 | <- | Minus |
| 3L | 4181255..4181450 | 294..489 | 100 | <- | Minus |
| 3L | 4181525..4181801 | 17..293 | 100 | | Minus |
| 3L | 4180299..4180355 | 901..957 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:17:30 Download gff for
BS27908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4180299..4180355 | 901..957 | 100 | <- | Minus |
| arm_3L | 4180731..4180967 | 664..900 | 100 | <- | Minus |
| arm_3L | 4181028..4181201 | 490..663 | 100 | <- | Minus |
| arm_3L | 4181255..4181450 | 294..489 | 100 | <- | Minus |
| arm_3L | 4181525..4181801 | 17..293 | 100 | | Minus |
BS27908.pep Sequence
Translation from 16 to 957
> BS27908.pep
MKKSSTLTTTTSMPASPTLSAQTLSASKISLNSSRCGSAGSGCGSASGSM
RSACQSPVRPGSGCVDAIKAKREEIEMDTLLEKAKFYTSVCLGTTAILSV
FTFLFLIPFVVDPAISTIIADYDPVPVTCIVIDHIYAEGIKNCSWSSCRE
GCTSSLTKCHQLFVNYTRIPFSEWERNPRDLDTVNWDVSYTKFLINSEGC
GYPPTTNCSIFARQYGFSHIGEPFPCFYSRAYPEVVIGRYSWENNLYHLI
LSLIIPNVLFAISIGVLSYWYCPCCEKACNKSSRVYAEKFPTKEEIVNCM
KCNTEKSLSLNVF*
BS27908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh2-PB | 313 | CG15004-PB | 1..313 | 1..313 | 1679 | 100 | Plus |
| Teh2-PA | 309 | CG15004-PA | 1..299 | 1..299 | 1585 | 98.7 | Plus |
| Teh1-PA | 279 | CG12806-PA | 41..237 | 82..277 | 321 | 37 | Plus |
| Teh1-PB | 299 | CG12806-PB | 41..237 | 82..277 | 321 | 37 | Plus |
| tipE-PB | 452 | CG1232-PB | 3..96 | 73..166 | 224 | 45.7 | Plus |
