BS27909.complete Sequence
458 bp assembled on 2011-09-30
GenBank Submission: KX805053
> BS27909.complete
GAAGTTATCAGTCGACATGCGTCGCACTTGGGTCCTGTTTTACTTATTCC
TAATTGGGTTGGCATTGGTAAAGACCACACCGAAAGAACTTCACTCAGAA
TCGATTTTTGAAGATGACGTCGCTCTAAGGTCCAAGTCAATCATTACAAC
AACCCGACCACCTGTGACAATCAGGCGCGTTGTAGCCAAGTCAAAGGGTA
AGGATCCAGAAAGAACTGACCTCCACCGCAAGCACCTCACACATCACAAA
CATCACTCAAAAAACAAAAAAAAGAATCCACATAATCGTGCCGAAGCGAA
TCGAAACAAGGATCATAGTCCCCATGATCCCCACAAAAACCTGAAAAGAA
AGGCAGAGGCACTCCCTAAGTCAAATCAGAATATAAATGGCACTACTTCT
CTGGAAGCCAAGAGTACGTCTTTAAAAGATGTACATAAGTGAAAGCTTTC
TAGACCAT
BS27909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32457-RC | 426 | CG32457-PC | 1..426 | 17..442 | 2130 | 100 | Plus |
| CG32457-RB | 492 | CG32457-PB | 191..492 | 141..442 | 1510 | 100 | Plus |
| CG32457-RB | 492 | CG32457-PB | 1..124 | 17..140 | 620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32457-RC | 555 | CG32457-RC | 28..454 | 17..443 | 2135 | 100 | Plus |
| CG32457-RB | 621 | CG32457-RB | 218..520 | 141..443 | 1515 | 100 | Plus |
| CG32457-RB | 621 | CG32457-RB | 28..151 | 17..140 | 620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22987859..22988161 | 141..443 | 1515 | 100 | Plus |
| 3L | 28110227 | 3L | 22987669..22987792 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:37:05 has no hits.
BS27909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:40 Download gff for
BS27909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32457-RC | 28..452 | 17..441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:20:00 Download gff for
BS27909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32457-RC | 28..452 | 17..441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:29 Download gff for
BS27909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32457-RC | 28..452 | 17..441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:29 Download gff for
BS27909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22987859..22988159 | 141..441 | 100 | | Plus |
| 3L | 22987669..22987792 | 17..140 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:20:00 Download gff for
BS27909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22980769..22980892 | 17..140 | 100 | -> | Plus |
| arm_3L | 22980959..22981259 | 141..441 | 100 | | Plus |
BS27909.pep Sequence
Translation from 16 to 441
> BS27909.pep
MRRTWVLFYLFLIGLALVKTTPKELHSESIFEDDVALRSKSIITTTRPPV
TIRRVVAKSKGKDPERTDLHRKHLTHHKHHSKNKKKNPHNRAEANRNKDH
SPHDPHKNLKRKAEALPKSNQNINGTTSLEAKSTSLKDVHK*
BS27909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32457-PC | 141 | CG32457-PC | 1..141 | 1..141 | 742 | 100 | Plus |
| CG32457-PB | 163 | CG32457-PB | 1..163 | 1..141 | 708 | 85.9 | Plus |
