BS27911.complete Sequence
680 bp assembled on 2011-09-30
GenBank Submission: KX801288
> BS27911.complete
GAAGTTATCAGTCGACATGTGTGCGGCCCTCTTACGAAGTGTTAAATTGG
TTTATTTACGGCCAATACTAGCTAAACCGAATTTCCAGCTCTTACACACC
AGCAGCGTGCTCCGCAAATGGCGGAATGCATCCTCCGGCGAAGTGGAACG
GAAGCTCCTCTTTGGCGACAGGCTACCAGATAACTATAAACTGATTTACC
GGGCCCCTATCGAGAGCTACGTGACCTGGACGAAGAATATATCCACTGCC
ACGACCACTGTACTTGCTGCGGTGGCCGCCTATCACTATGCCACAACCAT
AAACTACCTGGATATGGTCCAGAAAATGGACATAGCCATTCTGGTGTCCC
AGGAATCAGATCTGTACTACTTTGTGGGTGGATTTCTGCTTATAAACCTG
GCGATTCGAGCTTTTGTCGCCAAATATCCACTGAGAATATACAAGAGCTC
GGAAAAATACGTGGCTGTCTATGGGTCCCAACTACCCATTGGAACTGTAA
AACACTATTTTGAACGCGGTCAAATAGCTGAATACAAGAATTTTTTAAAT
CCCTGGAGCCACATTATGTACAAACTGGGCAACCGCTCCTCAATGCTTCT
GGTTGATTACTTCAAGACCCCCTCGGAGTTCCACCAACTGTTCGCGACCA
AACAAGAAACGTAGAAGCTTTCTAGACCAT
BS27911.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33228-RC | 648 | CG33228-PC | 1..648 | 17..664 | 3240 | 100 | Plus |
| CG33228-RB | 648 | CG33228-PB | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33228-RC | 737 | CG33228-RC | 46..694 | 17..665 | 3245 | 100 | Plus |
| CG33228-RB | 809 | CG33228-RB | 100..748 | 17..665 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24668737..24669096 | 456..97 | 1800 | 100 | Minus |
| 2R | 25286936 | 2R | 24668472..24668680 | 665..457 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 24669152..24669231 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:33:23 has no hits.
BS27911.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:34 Download gff for
BS27911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 100..747 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:58 Download gff for
BS27911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 100..747 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:55 Download gff for
BS27911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 100..747 | 17..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:55 Download gff for
BS27911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24668473..24668680 | 457..664 | 100 | <- | Minus |
| 2R | 24668737..24669096 | 97..456 | 100 | <- | Minus |
| 2R | 24669152..24669231 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:58 Download gff for
BS27911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20555996..20556203 | 457..664 | 100 | <- | Minus |
| arm_2R | 20556260..20556619 | 97..456 | 100 | <- | Minus |
| arm_2R | 20556675..20556754 | 17..96 | 100 | | Minus |
BS27911.pep Sequence
Translation from 16 to 663
> BS27911.pep
MCAALLRSVKLVYLRPILAKPNFQLLHTSSVLRKWRNASSGEVERKLLFG
DRLPDNYKLIYRAPIESYVTWTKNISTATTTVLAAVAAYHYATTINYLDM
VQKMDIAILVSQESDLYYFVGGFLLINLAIRAFVAKYPLRIYKSSEKYVA
VYGSQLPIGTVKHYFERGQIAEYKNFLNPWSHIMYKLGNRSSMLLVDYFK
TPSEFHQLFATKQET*
BS27911.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33228-PC | 215 | CG33228-PC | 1..215 | 1..215 | 1107 | 100 | Plus |
| CG33228-PB | 215 | CG33228-PB | 1..215 | 1..215 | 1107 | 100 | Plus |
