BS27912.complete Sequence
1301 bp assembled on 2011-10-21
GenBank Submission: KX801628
> BS27912.complete
GAAGTTATCAGTCGACATGTACGCCGGTCGGGCGACACAATTTGCCAAAA
CCATCAGCAGCATGGCGTGCAGCATACAGAAGCAACCTCAAGCTCCGCAA
TCAGTGGATCCTGGCACTGCAGCAGTGGATCGGGTGGGTGGAGGAGGCGG
TGGCCCCAGTGGAGCTGGCACCGTTCCCTCCACGCCGAAAGCCAAGACCG
CCCAGCCGAGGGGCTCCCTGCCAACGGACGTGAACCAGCCACCGTTGGAA
TTTCAGTGGCCACCGCCCGTTCCCGTTTCGATACACACGAGCAACTTGCG
TCTGAACATGATGAACCAGGATCCCAAGGACCTCCACACAGCCAGAGCCA
TTATCGAGGAGCTGCGCTCCAAGGTGCGCTTCCAGACGGAGCACATCATG
AAGTGGCGCAAAGCGTATGCCATGCAGGTCCAGCAACACTATCGTTACCA
GAAGGAGAAATCTGATCAGATGAACTCGTTGACCTCGCAGCTCTTGCTCT
TGGAATCCCGACTGAAGCGGAAGCAGAAGCAGATAGCCAGTCTATTGAAC
CATCGGGAGTTGACCATCCAGCGCCAGCAGAAGATCATCGACACCCTGTC
CTCCCGGCTGGTGGATCACGGGCTGGAGACCATTGAAGCTAGCTATGCCA
ACGAGCTGGACTCCCTGAACGACTCGGATTCGGCGGTGGTGCTGGAGGAC
ATTGACTCGGACAGCCCGATGACATTGGGCACGCGACGGAAGAGTAGTGG
CGCTGGCGGATTGGGCGGCGTGCTGGGCAGCGATGGCATCACCATAGTGC
GGTCCATATCCGATGCAATCGAGACGAATCACAACAAGTACGGAGCGGCC
AGGCGGAACAACTGCTTCCTGCGGCGTCCCGATATCCTGGAAACGGTATA
TTCGGTCGAGGAGGATCCCGAACCCACCACGGACGTGGCAGAGAAGCGGG
ACAAGTTCAAGAACCGCTCCGACAAGGCTCTCAGCTCCAGCTCGACGGAG
GGTCAGATAGACGCCGCCAGTCCCTCGACCGCAGACAAAGCCAAAGATTC
ATCGCCCGTCGACGGCGGATCCACCATTCCAAGACGCCAACTGGGAGCCC
TCAAAAGATCTCCCAGCCACGACTCTCCGTGCACCACACTCAGTGTCAAG
GTCCCCCAGCTGCAGCCACCATCTCCTACACCATCGACACAAGGAGTCCA
GGATCCGCCCAACGGAAAAACCCAGGATAATGTTGAGCCAATGGAGGGAA
TTCCCATATTCTTAGATTGCGAAATAGACTTATAGAAGCTTTCTAGACCA
T
BS27912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43861-RB | 1269 | CG43861-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| CG43861-RD | 1413 | CG43861-PD | 1..1210 | 17..1226 | 6050 | 100 | Plus |
| CG43861-RC | 1707 | CG43861-PC | 1..1210 | 17..1226 | 6050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43861-RB | 2907 | CG43861-RB | 721..1989 | 17..1285 | 6345 | 100 | Plus |
| CG43861-RD | 3486 | CG4-RD | 721..1930 | 17..1226 | 6050 | 100 | Plus |
| CG43861-RC | 2686 | CG43861-RC | 721..1930 | 17..1226 | 6050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19970519..19971320 | 1226..425 | 4010 | 100 | Minus |
| 2L | 23513712 | 2L | 19971404..19971816 | 429..17 | 2065 | 100 | Minus |
| 2L | 23513712 | 2L | 19970402..19970464 | 1285..1223 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:28:17 has no hits.
BS27912.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 15:45:37 Download gff for
BS27912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13966-RB | 721..1989 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:14 Download gff for
BS27912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43861-RB | 721..1989 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:02 Download gff for
BS27912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43861-RB | 721..1989 | 17..1285 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:02 Download gff for
BS27912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19970402..19970461 | 1226..1285 | 100 | <- | Minus |
| 2L | 19970520..19971317 | 428..1225 | 100 | <- | Minus |
| 2L | 19971406..19971816 | 17..427 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:14 Download gff for
BS27912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19970402..19970461 | 1226..1285 | 100 | <- | Minus |
| arm_2L | 19970520..19971317 | 428..1225 | 100 | <- | Minus |
| arm_2L | 19971406..19971816 | 17..427 | 100 | | Minus |
BS27912.pep Sequence
Translation from 16 to 1284
> BS27912.pep
MYAGRATQFAKTISSMACSIQKQPQAPQSVDPGTAAVDRVGGGGGGPSGA
GTVPSTPKAKTAQPRGSLPTDVNQPPLEFQWPPPVPVSIHTSNLRLNMMN
QDPKDLHTARAIIEELRSKVRFQTEHIMKWRKAYAMQVQQHYRYQKEKSD
QMNSLTSQLLLLESRLKRKQKQIASLLNHRELTIQRQQKIIDTLSSRLVD
HGLETIEASYANELDSLNDSDSAVVLEDIDSDSPMTLGTRRKSSGAGGLG
GVLGSDGITIVRSISDAIETNHNKYGAARRNNCFLRRPDILETVYSVEED
PEPTTDVAEKRDKFKNRSDKALSSSSTEGQIDAASPSTADKAKDSSPVDG
GSTIPRRQLGALKRSPSHDSPCTTLSVKVPQLQPPSPTPSTQGVQDPPNG
KTQDNVEPMEGIPIFLDCEIDL*
BS27912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43861-PB | 422 | CG43861-PB | 1..422 | 1..422 | 2170 | 100 | Plus |
| CG43861-PD | 470 | CG43861-PD | 1..403 | 1..403 | 2067 | 100 | Plus |
| CG43861-PA | 470 | CG43861-PA | 1..403 | 1..403 | 2067 | 100 | Plus |
| CG43861-PC | 568 | CG43861-PC | 1..403 | 1..403 | 2067 | 100 | Plus |
