BS27913.complete Sequence
803 bp assembled on 2012-04-25
GenBank Submission: KX800531
> BS27913.complete
GAAGTTATCAGTCGACATGCGAATTCTGAATTGCCGCATTTGCTCTAGAT
CAGATGCCCCAATAGACCTTTTTGGTCCAGGAAACGGTCATCTAGTTCGT
CAAATTCACTCCATTACTGGGGTGGAGCTAAGCTGCAAGAAAGAAATATC
CGGCCAAATGTGCACGACTTGCCTGGACAATCTGCAGGCAGCCATTAAGT
TCCGCCAGCGCTGCATCATTGCCGAGAAACAGAATCTGGAAAGGATTGAG
TGCGACAGCAAGGATTGCTCCACAGATCCAATAATATACGAAGACATCGA
TGATAACCAAATTGAGAGTGAGTTGGACGAGTCCATTCTATGTCCTGAAG
TCAAAGATCTTCCAATGCCAAGTGCTGAAAAGGTCTCAGCACCGACTAGT
TTGAACCATCAAAAGTCAATTGGAGGAGGTACTGGTCCATATGTATGCCC
TGATTGCGGAAGGATCATTAACAATAAGTCAAACTTTCAAGAGCACACGC
TCCGGCACACAGGCATCAAGAATTTCCACTGTGTTTTTTTGAATTGTGAA
AGGAGCTTTGCAACTCGAAAGGAACTGACTAGCCATACGCGTATCCACAC
GGGCGAGCAGCCATACGTGTGCGTCTACTGTCCACGTCGGTTCTCCTCTT
CAGGCGCTCGCCAGGAGCACCATCGCCGCCATCGGAACGAACGCCGCTAC
GAGTGCGACACGTGCAAAAAGAGTTTTGTAAGCTCCGGATGTCTCAGGAA
GCACAAGATGATCCATGTGGATGCGCGGAATCACTAGAAGCTTTCTAGAC
CAT
BS27913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6813-RD | 771 | CG6813-PD | 1..771 | 17..787 | 3855 | 100 | Plus |
| CG6813-RB | 771 | CG6813-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
| CG6813-RC | 885 | CG6813-PC | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6813-RD | 1181 | CG6813-RD | 46..823 | 10..787 | 3875 | 99.9 | Plus |
| CG6813-RB | 1251 | CG6813-RB | 46..823 | 10..787 | 3875 | 99.9 | Plus |
| CG6813-RC | 991 | CG6813-RC | 46..822 | 10..786 | 3870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11626002..11626417 | 541..126 | 2080 | 100 | Minus |
| 3R | 32079331 | 3R | 11625697..11625943 | 787..541 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 11626472..11626593 | 131..10 | 580 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:08:50 has no hits.
BS27913.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:24 Download gff for
BS27913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6813-RB | 53..823 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:51 Download gff for
BS27913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6813-RB | 53..823 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:08 Download gff for
BS27913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6813-RB | 53..823 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:08 Download gff for
BS27913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11625697..11625943 | 541..787 | 100 | <- | Minus |
| 3R | 11626003..11626415 | 128..540 | 100 | <- | Minus |
| 3R | 11626476..11626586 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:51 Download gff for
BS27913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7452198..7452308 | 17..127 | 100 | | Minus |
| arm_3R | 7451419..7451665 | 541..787 | 100 | <- | Minus |
| arm_3R | 7451725..7452137 | 128..540 | 100 | <- | Minus |
BS27913.pep Sequence
Translation from 16 to 786
> BS27913.pep
MRILNCRICSRSDAPIDLFGPGNGHLVRQIHSITGVELSCKKEISGQMCT
TCLDNLQAAIKFRQRCIIAEKQNLERIECDSKDCSTDPIIYEDIDDNQIE
SELDESILCPEVKDLPMPSAEKVSAPTSLNHQKSIGGGTGPYVCPDCGRI
INNKSNFQEHTLRHTGIKNFHCVFLNCERSFATRKELTSHTRIHTGEQPY
VCVYCPRRFSSSGARQEHHRRHRNERRYECDTCKKSFVSSGCLRKHKMIH
VDARNH*
BS27913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6813-PD | 256 | CG6813-PD | 1..256 | 1..256 | 1398 | 100 | Plus |
| CG6813-PB | 256 | CG6813-PB | 1..256 | 1..256 | 1398 | 100 | Plus |
| CG6813-PC | 294 | CG6813-PC | 1..256 | 1..256 | 1398 | 100 | Plus |
| CG11762-PA | 312 | CG11762-PA | 6..278 | 6..255 | 327 | 30.4 | Plus |
| CG4854-PA | 319 | CG4854-PA | 8..288 | 2..254 | 283 | 29.2 | Plus |
