BS27914.complete Sequence
452 bp assembled on 2011-09-30
GenBank Submission: KX802866
> BS27914.complete
GAAGTTATCAGTCGACATGCAGCTTACCCGCCTTTTACTGAAGCCTCGAG
CCTCGGAAGTATTGACCGCATATTTGAAACAATGCCATGAGCCACCTTGG
ACATCATATTTCGTGAAGTTTCACGATGTGGCCAACGATCAGAGGGGAAT
GTCTCACTTTAATTGGACCCTGGAAAACGGAACCAACTATCACATTCTTC
GCACCGCCTGTTATCCCTATATGAAGTACCACTGTAGCAAGAGGGAGGTG
CAGGATCTTTGGCTGGAGGACAAGTTCTTTCGCTTCCTTAAGGTGATTAA
TTTGGGCTTACCAATGCTCTTCTATGGACTGGCTGCCATCCGTCTAATTA
GTCACACCGAGATCGTTCATGTCAGCGAGACGGTAAAAGTTCCCATATAC
TTTCTATATCCTGAGGACAAGGGCTCAAGCTTTTGAAAGCTTTCTAGACC
AT
BS27914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34148-RB | 420 | CG34148-PB | 1..420 | 17..436 | 2100 | 100 | Plus |
| CG34148-RC | 213 | CG34148-PC | 1..213 | 17..224 | 955 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34148-RB | 595 | CG34148-RB | 99..518 | 17..436 | 2100 | 100 | Plus |
| CG34148-RC | 587 | CG34148-RC | 99..510 | 17..436 | 1785 | 95.8 | Plus |
| P5CDh2-RG | 2354 | CG33092-RG | 197..386 | 306..117 | 950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21878232..21878421 | 306..117 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 21877947..21878078 | 436..305 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 21878487..21878588 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:12 has no hits.
BS27914.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:42 Download gff for
BS27914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34148-RB | 99..517 | 17..435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:23:54 Download gff for
BS27914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34148-RB | 99..517 | 17..435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:59 Download gff for
BS27914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34148-RB | 99..517 | 17..435 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:59 Download gff for
BS27914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21877948..21878077 | 306..435 | 100 | <- | Minus |
| 3R | 21878233..21878419 | 119..305 | 100 | <- | Minus |
| 3R | 21878487..21878588 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:23:54 Download gff for
BS27914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17703670..17703799 | 306..435 | 100 | <- | Minus |
| arm_3R | 17703955..17704141 | 119..305 | 100 | <- | Minus |
| arm_3R | 17704209..17704310 | 17..118 | 100 | | Minus |
BS27914.pep Sequence
Translation from 16 to 435
> BS27914.pep
MQLTRLLLKPRASEVLTAYLKQCHEPPWTSYFVKFHDVANDQRGMSHFNW
TLENGTNYHILRTACYPYMKYHCSKREVQDLWLEDKFFRFLKVINLGLPM
LFYGLAAIRLISHTEIVHVSETVKVPIYFLYPEDKGSSF*
BS27914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34148-PB | 139 | CG34148-PB | 1..139 | 1..139 | 756 | 100 | Plus |
| CG34148-PC | 70 | CG34148-PC | 1..34 | 1..34 | 182 | 100 | Plus |
