Clone BS27916 Report

Search the DGRC for BS27916

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:279
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptwac-RC
Protein status:BS27916.pep: gold
Sequenced Size:485

Clone Sequence Records

BS27916.complete Sequence

485 bp assembled on 2011-09-30

GenBank Submission: KX804037

> BS27916.complete
GAAGTTATCAGTCGACATGCGTCTAGGCCAGCACTTCGATGACCAGTTAA
AGCTGGCTAGCGTCGAGTTGGGCGATTTCTCGGACGATGACCTGGCGCTC
CTTGACAAATGCGCCCAATATTATTCACTTTTGCACATTCACGACATCAA
TCTGAACTACTTGCGCGACTTCTATTGTGCCAAGAAGAGGGAATGCATAG
AAAACCGGCAGACCACAGTGCAGCAACGCGTAGAGCTGCAGCGCATCCTC
TCGTCCATCGAGGAGGCTACTAGGGACGTAGTTATGTTGGAGAGATTTAA
TGCTGCTGCGGAAGAGCGGCTCATCCCGGATATCGTCGTAATGCAGCGAA
ACGCCCAACAGCTTGCAACAAAACAGGCCTTACTGGACCGGCAAAAAACC
CTTAAGATCCCAAAGGATTTTAGCATTGAAAGTGTCATCGAGAAGGTAGA
TTCGCTGGAGCAGCGCTAAAAGCTTTCTAGACCAT

BS27916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
wac-RD 492 CG13879-PD 40..492 17..469 2250 99.8 Plus
wac-RC 453 CG13879-PC 1..453 17..469 2250 99.8 Plus
wac-RB 492 CG13879-PB 40..492 17..469 2250 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
wac-RD 808 CG13879-RD 256..709 17..470 2255 99.8 Plus
wac-RC 633 CG13879-RC 81..534 17..470 2255 99.8 Plus
wac-RB 634 CG13879-RB 82..535 17..470 2255 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 258486..258763 17..294 1375 99.6 Plus
3L 28110227 3L 258821..258998 293..470 890 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:39:11 has no hits.

BS27916.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:44 Download gff for BS27916.complete
Subject Subject Range Query Range Percent Splice Strand
wac-RB 82..532 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:27:59 Download gff for BS27916.complete
Subject Subject Range Query Range Percent Splice Strand
wac-RB 82..532 17..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:26 Download gff for BS27916.complete
Subject Subject Range Query Range Percent Splice Strand
wac-RB 82..532 17..467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:26 Download gff for BS27916.complete
Subject Subject Range Query Range Percent Splice Strand
3L 258823..258995 295..467 100   Plus
3L 258486..258763 17..294 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:27:59 Download gff for BS27916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 258823..258995 295..467 100   Plus
arm_3L 258486..258763 17..294 99 -> Plus

BS27916.pep Sequence

Translation from 16 to 468

> BS27916.pep
MRLGQHFDDQLKLASVELGDFSDDDLALLDKCAQYYSLLHIHDINLNYLR
DFYCAKKRECIENRQTTVQQRVELQRILSSIEEATRDVVMLERFNAAAEE
RLIPDIVVMQRNAQQLATKQALLDRQKTLKIPKDFSIESVIEKVDSLEQR
*

BS27916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
wac-PC 150 CG13879-PC 1..150 1..150 751 100 Plus
wac-PD 163 CG13879-PD 14..163 1..150 751 100 Plus
wac-PB 163 CG13879-PB 14..163 1..150 751 100 Plus