BS27917.complete Sequence
1070 bp assembled on 2011-09-30
GenBank Submission: KX806244
> BS27917.complete
GAAGTTATCAGTCGACATGGCGATGCGACACTTGACAGCTGCCACAATGG
GCGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTG
ATGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAA
TGCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATG
AGCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGT
TGCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGA
GGCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCG
GTCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGT
TTCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACA
GCAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATC
GGTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAG
GTACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGAC
CTACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCG
TTGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATC
GTTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATC
GCCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGACAACAACA
TCTTTCCACTTATTGTGCGTGACCAAAAGTGCATTGGCGCCCCAGCATTC
CGTGCCTTGCCGGGCATCGACAACTGGTGCGAGATCAATTGCCTGCGCTA
TCCGCCCAATTGTCCGGAGGACGCCTGCCAATGTCCTCAGGAGTGCGTGG
CCATTGGCGAGTATGCTGGACAGGATGGTGCCGACACCTACTGCATGGAC
AAGTGTCTCAACTATGAATCGGAGTGTCCGCCGGACAGATGCCGCTGCTA
CTAAAAGCTTTCTAGACCAT
BS27917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-RC | 1038 | CG42749-PC | 1..1038 | 17..1054 | 5190 | 100 | Plus |
| CG42749-RD | 1038 | CG42749-PD | 1..1038 | 17..1054 | 5190 | 100 | Plus |
| CG42749-RB | 858 | CG42749-PB | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-RC | 1412 | CG42749-RC | 280..1319 | 16..1055 | 5200 | 100 | Plus |
| CG42749-RD | 1488 | CG42749-RD | 356..1395 | 16..1055 | 5200 | 100 | Plus |
| CG42749-RB | 1407 | CG42749-RB | 280..1083 | 16..819 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5301464..5302059 | 73..668 | 2980 | 100 | Plus |
| X | 23542271 | X | 5302118..5302271 | 666..819 | 770 | 100 | Plus |
| X | 23542271 | X | 5306077..5306195 | 937..1055 | 595 | 100 | Plus |
| X | 23542271 | X | 5305878..5305995 | 819..936 | 590 | 100 | Plus |
| X | 23542271 | X | 5301347..5301404 | 16..73 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:39:54 has no hits.
BS27917.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:45 Download gff for
BS27917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RC | 253..1288 | 17..1052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:30:02 Download gff for
BS27917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RD | 357..1392 | 17..1052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:42 Download gff for
BS27917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RD | 357..1392 | 17..1052 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:42 Download gff for
BS27917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5301348..5301404 | 17..73 | 100 | -> | Plus |
| X | 5301465..5302059 | 74..668 | 100 | -> | Plus |
| X | 5302121..5302271 | 669..819 | 100 | -> | Plus |
| X | 5305879..5305995 | 820..936 | 100 | -> | Plus |
| X | 5306077..5306192 | 937..1052 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:30:02 Download gff for
BS27917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5200110..5200225 | 937..1052 | 100 | | Plus |
| arm_X | 5195381..5195437 | 17..73 | 100 | -> | Plus |
| arm_X | 5195498..5196092 | 74..668 | 100 | -> | Plus |
| arm_X | 5196154..5196304 | 669..819 | 100 | -> | Plus |
| arm_X | 5199912..5200028 | 820..936 | 100 | -> | Plus |
BS27917.pep Sequence
Translation from 16 to 1053
> BS27917.pep
MAMRHLTAATMGVLLPVGVLGFVVLMQLMASVRGHGRLMDPPARNAMWRF
GYPNPVNYNDNELFCGGYAVQWEQNKGRCGICGDAYHVKSPRPHEAGGQY
AKGIISRYYTAGQTIDVEVELTANHYGRFEMFLCPNNNPRQEATQQCFDR
YPLLISGSREHRYLIPRDAKKKDIFRYKVRLPPYVTCTQCVLQWTYYTAN
MWGTCANGTEAVGCGKAETFRNCADVAIVSNTGGGIPPPFVNNKSPYLLY
YRDYRAPADNNIFPLIVRDQKCIGAPAFRALPGIDNWCEINCLRYPPNCP
EDACQCPQECVAIGEYAGQDGADTYCMDKCLNYESECPPDRCRCY*
BS27917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-PC | 345 | CG42749-PC | 1..345 | 1..345 | 1947 | 100 | Plus |
| CG42749-PD | 345 | CG42749-PD | 1..345 | 1..345 | 1947 | 100 | Plus |
| CG42749-PB | 285 | CG15786-PA | 1..269 | 1..269 | 1482 | 99.6 | Plus |
| CG42598-PB | 340 | CG42598-PB | 1..226 | 6..230 | 489 | 41.6 | Plus |
| CG41284-PC | 340 | CG41284-PC | 1..226 | 6..230 | 481 | 41.1 | Plus |
