BS27918.complete Sequence
791 bp assembled on 2011-09-30
GenBank Submission: KX801945
> BS27918.complete
GAAGTTATCAGTCGACATGAAGCGAACTCTCCTGATTTTGGCCATAGTTT
TTTGTGGTCTAGCTATTGTGAAGGCATTAGAGTGCCAGGAGTGCCTAGAG
GATAACGATGTGTATTGTGTAGACCAAACTTCCTATAGGAATTGCATCAA
AAGCAAGCCTTTTGGCAACGTGATAAGCTGCCCCGACGATACGGTTTGCA
CAAACTCGAAAAATGTTTGTGTGAAAAGCTCTGATCTAGCAGAATCTGAA
GTCGATGTCTGTGGAACCTCCGGTGGAAACCAATGTGCAACATGCACAAA
TCAGAAATATACTTGTGTTAGCAAAAATCAATTTGCGAGATGTTCCGAAT
CGGTTGTGGTCGACTCAAACATCTATGACTGCGATACTGATGAGATTTGC
AGTTCGGAAGCACTGGAAAAGTACGACAACATATGTACGCCTTCTTGTGT
CCTCGATTTTCTCGACGTGAGAGCCACTTGCAGCAACAGTGAATACACGA
CAACAACTACCGCAGCACCGACAACTGTCACACCCAGTACAGAGCAGAAA
AATAGTGCCTGTACTGAAGCTGAAAAAGATCTTCAAATACCTAAGGAAAC
CTTGTACTTCTTTACGATCTACAAGGAGGATACTTCCTGCCACACTTATC
TCTACTGCGAAAGAACTGAATCCACCGAATGGGACACTGTTTATTTGTCC
TGCCACCAACCCAAGCCATATTTCGATTCTACGACCAGCCTTTGCGTATC
GACGAAACCAACGGGATGCTCCTAAAAGCTTTCTAGACCAT
BS27918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33258-RC | 759 | CG33258-PC | 1..759 | 17..775 | 3795 | 100 | Plus |
| CG33258-RB | 759 | CG33258-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33258-RC | 819 | CG33258-RC | 42..801 | 17..776 | 3800 | 100 | Plus |
| CG33258-RB | 964 | CG33258-RB | 42..801 | 17..776 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16083160..16083475 | 461..776 | 1580 | 100 | Plus |
| 3L | 28110227 | 3L | 16082779..16083089 | 150..460 | 1555 | 100 | Plus |
| 3L | 28110227 | 3L | 16082592..16082724 | 17..149 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:40:36 has no hits.
BS27918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:46 Download gff for
BS27918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33258-RB | 42..798 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:32:07 Download gff for
BS27918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33258-RB | 42..798 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:58 Download gff for
BS27918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33258-RB | 42..798 | 17..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:58 Download gff for
BS27918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16082592..16082724 | 17..149 | 100 | -> | Plus |
| 3L | 16082779..16083089 | 150..460 | 100 | -> | Plus |
| 3L | 16083160..16083472 | 461..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:32:07 Download gff for
BS27918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16076260..16076572 | 461..773 | 100 | | Plus |
| arm_3L | 16075692..16075824 | 17..149 | 100 | -> | Plus |
| arm_3L | 16075879..16076189 | 150..460 | 100 | -> | Plus |
BS27918.pep Sequence
Translation from 16 to 774
> BS27918.pep
MKRTLLILAIVFCGLAIVKALECQECLEDNDVYCVDQTSYRNCIKSKPFG
NVISCPDDTVCTNSKNVCVKSSDLAESEVDVCGTSGGNQCATCTNQKYTC
VSKNQFARCSESVVVDSNIYDCDTDEICSSEALEKYDNICTPSCVLDFLD
VRATCSNSEYTTTTTAAPTTVTPSTEQKNSACTEAEKDLQIPKETLYFFT
IYKEDTSCHTYLYCERTESTEWDTVYLSCHQPKPYFDSTTSLCVSTKPTG
CS*
BS27918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33258-PC | 252 | CG33258-PC | 1..252 | 1..252 | 1371 | 100 | Plus |
| CG33258-PB | 252 | CG33258-PB | 1..252 | 1..252 | 1371 | 100 | Plus |
| CG13075-PB | 339 | CG13075-PB | 1..252 | 1..252 | 675 | 50.4 | Plus |
| CG32024-PA | 209 | CG32024-PA | 1..209 | 1..252 | 251 | 29.5 | Plus |
| CG13312-PA | 342 | CG13312-PA | 30..245 | 23..252 | 195 | 25.1 | Plus |
