BS27920.complete Sequence
575 bp assembled on 2011-09-30
GenBank Submission: KX801534
> BS27920.complete
GAAGTTATCAGTCGACATGACGACCCACCAGTTGCTAAACAAGAATGTTC
GCACCATGCCCTCCTGGGTGATGGAGGCAAATGACCGCATTGGGCCCAAA
CCGCCACCCACGCCACCAAACGGTGTGGCTGGTGGTCTTCCCAAGGCGCC
TGCTCTGCCGCCCAAGGCGAAGAGCACTCCCGAGCCGGACTACGAGATCA
TCGAATTCTCCAGCCAGCAGTACTCCAACGAACCGATGAAGACCACAGTG
ATCAGAACCAAGACACCAGATAACAAACTAAAGTGCACCTTGTGCGGTTC
CCAGAATCCCTGGGTAACCTGTGCCGAGTGCGCCGGCCAAATCTTTTGCG
CCTCCTGCGACGACATGTTCCACAAGCATCCCAAACGTAAGCAGCACATG
AGAAAGGCTGTGGAGCAGGGCACACCGCCGATTCCGCCAAAGGCACAGGC
CGGTGGTGGGGCACCACCACCAGTGGCACCTCCACGACGCAGCAAACGAG
GCCTTTTGACACCGTTTCTGGGCCGCAAGGATCAGGTACGCCACTGCACG
ATCTCCTAGAAGCTTTCTAGACCAT
BS27920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11321-RK | 543 | CG11321-PK | 1..543 | 17..559 | 2715 | 100 | Plus |
| CG11321-RD | 543 | CG11321-PD | 1..543 | 17..559 | 2715 | 100 | Plus |
| CG11321-RJ | 8397 | CG11321-PJ | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11321-RK | 763 | CG11321-RK | 129..672 | 17..560 | 2720 | 100 | Plus |
| CG11321-RD | 783 | CG11321-RD | 149..692 | 17..560 | 2720 | 100 | Plus |
| CG11321-RJ | 8906 | CG11321-RJ | 149..667 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6770335..6770534 | 269..70 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 6769928..6770083 | 560..405 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 6770133..6770273 | 407..267 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 6770591..6770644 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:42:16 has no hits.
BS27920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:47 Download gff for
BS27920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RD | 130..672 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:35:11 Download gff for
BS27920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RD | 130..672 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:40 Download gff for
BS27920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RD | 149..691 | 17..559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:40 Download gff for
BS27920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6769929..6770081 | 407..559 | 100 | <- | Minus |
| 2L | 6770134..6770270 | 270..406 | 100 | <- | Minus |
| 2L | 6770335..6770533 | 71..269 | 100 | <- | Minus |
| 2L | 6770591..6770644 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:35:11 Download gff for
BS27920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6769929..6770081 | 407..559 | 100 | <- | Minus |
| arm_2L | 6770134..6770270 | 270..406 | 100 | <- | Minus |
| arm_2L | 6770335..6770533 | 71..269 | 100 | <- | Minus |
| arm_2L | 6770591..6770644 | 17..70 | 100 | | Minus |
BS27920.pep Sequence
Translation from 16 to 558
> BS27920.pep
MTTHQLLNKNVRTMPSWVMEANDRIGPKPPPTPPNGVAGGLPKAPALPPK
AKSTPEPDYEIIEFSSQQYSNEPMKTTVIRTKTPDNKLKCTLCGSQNPWV
TCAECAGQIFCASCDDMFHKHPKRKQHMRKAVEQGTPPIPPKAQAGGGAP
PPVAPPRRSKRGLLTPFLGRKDQVRHCTIS*
BS27920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11321-PK | 180 | CG11321-PK | 1..180 | 1..180 | 996 | 100 | Plus |
| CG11321-PD | 180 | CG11321-PD | 1..180 | 1..180 | 996 | 100 | Plus |
| CG11321-PF | 834 | CG11321-PF | 1..174 | 1..174 | 958 | 99.4 | Plus |
| CG11321-PC | 834 | CG11321-PC | 1..174 | 1..174 | 958 | 99.4 | Plus |
| CG11321-PH | 887 | CG11321-PH | 1..174 | 1..174 | 958 | 99.4 | Plus |
