BS27921.complete Sequence
1634 bp assembled on 2012-04-25
GenBank Submission: KX803798
> BS27921.complete
GAAGTTATCAGTCGACATGAAGCGGGGCAAGAAGCAATGGGGCACCAGGG
AAAGATCAGGCATGAGCTTCCTTATCGTCATCACCTTCTTCGCCGTCTTT
GGACTAATCATTCTAACTGAGGTCTTCATGATCGACGAGCGCACCCACAG
CGGCATGTTGGCCATGAGGGCGGGCGGCGGTGGCGGTGCCAGTCTGGGCG
GACGGATGGGCGACTCGATGCCGGATTATGATAATGTTAAGGACGACTAC
GATCTATTGGATGCCAGCATTTTGAGTGATAATAAATTAGGATTTGTTCA
GCTGCGCGACAATAAATTGAAAATTCAAGAAGCCGCAGGCGCCGATGGTC
AGCGCCTGGCCGGAATGCTTCTCAATGGCGGTGGCGGTGGTGGTGGAGCC
GGAGCGTTTGGCGTCAATGTACCGCTCATACCCTGGGGCCAGGTGCTGCC
GGACAAGGTGGAGGAGACCCTGCCCCATTTCCCGTTTGGCACACGGCCCA
TCGATGGCGCCTGGCAGGTTGTCAACGGCACCCGCTTCAAGTTCTTTGTC
TACTCCGCCTACTTCGACCGGCGCGAAGGAGCACGCCTGGTGCGAGTGGT
GGGCGCCACCAAGACTCGGGGACCGGAGCGGGTGTGGTGTCGATTCTGGT
ACGGACCGAGTGCTGGCAATGGCACCGATGCGGGCTCCTCCACGGCACGT
GCCAAGTACTCCTCGGCCACTGTGATGGCTCGCGTCAAGATTATTCGCGA
GAACTGGAATCTAAAATACAGCGCCTGTTTCATCCTGTGCCCGGTACGAA
CTCCACCGCTGTCAGTTCCTCATTTCGTGAGCGTGGTATCCCGTTTGCGT
GCTCCGCCTGGTAATTTGCTGACTCTACGAAACACCGACCAGGATGCGGA
CTTTGCGGCGAGCAGAGCGCGTAATTCGAGTGCCAAGAAAGGATCGCCAG
TGGGTCATCCTCCGCCGAGTGGCGATAACATACCCGATCGCATAGCCGTC
TGCGTGAAACCCTTGCACTTCAACTACGACCAGGCGTTGTATCTTATGGA
GTACTTGGAGTTCTATGCACTGCTGGGTGTGTCCCACTTCACCTTCTACA
ACCACACTTTGGGACCACACGCCTCCTGCGTCCTGGAGAACTATCAAAAG
GGTCTGGTGCCCGGAAATCTGACCGCACACGATTTGGAAGCACTCACACC
AGCGGAGGCAGCCAACAATGCCACGCCCCGTGTTCTAAGGACACAATATC
AACGACCCACGGTCAGCATCCTGCCGTGGAATCTGCGCATGCGTAGCCAG
AAGGAGATTCGAACCGAAGGACTCTTTGCGGCCCTAAACGACTGCCTCTA
CCGCACCATGTATCGCTACAAGTATCTGGCACTGGTGGATCTGGACGAGT
TTATTGTGCCACGCTACTCGGATACGTTGAATGAACTCATTGGATCACTT
AATCAGCGCTTTCGCAATCGCAACACAGGAGCCTATTCCTTCCAGAATGC
CTTCTACTATCTTCAGTTTGCGGATGACAGCCTGGCTAGTTCTGGAATAG
AGGGTGGTAATGACCAACTGGCCAGAGTACGGGCCAATCTAGTCACTCAA
CGTAAAACACGAAGGTAAAAGCTTTCTAGACCAT
BS27921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9395-RD | 2523 | CG9395-PD | 243..1842 | 16..1615 | 8000 | 100 | Plus |
| CG9395-RC | 2523 | CG9395-PC | 243..1842 | 16..1615 | 8000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9395-RD | 3898 | CG9395-RD | 574..2173 | 16..1615 | 8000 | 100 | Plus |
| CG9395-RC | 4191 | CG9395-RC | 867..2466 | 16..1615 | 8000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13351930..13352635 | 1443..738 | 3530 | 100 | Minus |
| 2L | 23513712 | 2L | 13352801..13353212 | 739..328 | 2060 | 100 | Minus |
| 2L | 23513712 | 2L | 13351665..13351840 | 1618..1443 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 13353714..13353836 | 242..120 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 13354100..13354207 | 123..16 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 13353312..13353401 | 329..240 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:09:05 has no hits.
BS27921.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:25 Download gff for
BS27921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RB | 365..1964 | 17..1616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:56 Download gff for
BS27921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 868..2466 | 17..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:14 Download gff for
BS27921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 868..2466 | 17..1616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:14 Download gff for
BS27921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13351667..13351839 | 1444..1616 | 100 | <- | Minus |
| 2L | 13351930..13352633 | 740..1443 | 100 | <- | Minus |
| 2L | 13352801..13353210 | 330..739 | 100 | <- | Minus |
| 2L | 13353312..13353399 | 242..329 | 100 | <- | Minus |
| 2L | 13353715..13353834 | 122..241 | 100 | <- | Minus |
| 2L | 13354102..13354206 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:56 Download gff for
BS27921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13351667..13351839 | 1444..1616 | 100 | <- | Minus |
| arm_2L | 13351930..13352633 | 740..1443 | 100 | <- | Minus |
| arm_2L | 13352801..13353210 | 330..739 | 100 | <- | Minus |
| arm_2L | 13353312..13353399 | 242..329 | 100 | <- | Minus |
| arm_2L | 13353715..13353834 | 122..241 | 100 | <- | Minus |
| arm_2L | 13354102..13354206 | 17..121 | 100 | | Minus |
BS27921.pep Sequence
Translation from 16 to 1617
> BS27921.pep
MKRGKKQWGTRERSGMSFLIVITFFAVFGLIILTEVFMIDERTHSGMLAM
RAGGGGGASLGGRMGDSMPDYDNVKDDYDLLDASILSDNKLGFVQLRDNK
LKIQEAAGADGQRLAGMLLNGGGGGGGAGAFGVNVPLIPWGQVLPDKVEE
TLPHFPFGTRPIDGAWQVVNGTRFKFFVYSAYFDRREGARLVRVVGATKT
RGPERVWCRFWYGPSAGNGTDAGSSTARAKYSSATVMARVKIIRENWNLK
YSACFILCPVRTPPLSVPHFVSVVSRLRAPPGNLLTLRNTDQDADFAASR
ARNSSAKKGSPVGHPPPSGDNIPDRIAVCVKPLHFNYDQALYLMEYLEFY
ALLGVSHFTFYNHTLGPHASCVLENYQKGLVPGNLTAHDLEALTPAEAAN
NATPRVLRTQYQRPTVSILPWNLRMRSQKEIRTEGLFAALNDCLYRTMYR
YKYLALVDLDEFIVPRYSDTLNELIGSLNQRFRNRNTGAYSFQNAFYYLQ
FADDSLASSGIEGGNDQLARVRANLVTQRKTRR*
BS27921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9395-PD | 840 | CG9395-PD | 82..614 | 1..533 | 2807 | 100 | Plus |
| CG9395-PC | 840 | CG9395-PC | 82..614 | 1..533 | 2807 | 100 | Plus |
