BS27922.complete Sequence
2774 bp assembled on 2013-09-16
GenBank Submission: KX802644
> BS27922.complete
GAAGTTATCAGTCGACATGAGCAGAGTTAGGCAGCTCCACAATCACATCT
GGAATAATCAGAACTTTGATAAAGTGAAATCGGTTATGGACTGGTTACTA
GCAACTCCGCAGTTGTACAGCGCGTTCTCCTCCTTGGGTTGCTTGGAGGG
CGATACCTATGTGGTCAACCCGAATGCATTGGCCATTCTGGAGGAGATCA
ACTACAAGCTCACCTATGAGGACCAAACACTGCGCACCTTTCGACGGGCC
ATTGGATTTGGCCAGAATGTGAGGTCAGACCTGATACCGCTGCTGGAGAA
TGCCAAGGATGATGCGGTCCTGGAGTCGGTCATCCGGATACTCGTCAATC
TGACGGTGCCGGTGGAGTGCCTCTTCTCCGTGGACGTGATGTACCGCACG
GATGTGGGTCGCCACACCATCTTCGAGCTGAACAAGCTGCTGTACACCAG
CAAGGAAGCATTTACCGAGGCCAGGAGCACCAAGAGCGTGGTGGAGTACA
TGAAACACATACTGGAGTCGGACCCTAAGCTGTCGCCGCACAAATGCGAT
CAAATCAACAACTGTCTGCTGCTGCTGAGAAATATCCTGCACATTCCAGA
GACGCATGCCCATTGCGTGATGCCCATGATGCAGTCGATGCCGCATGGCA
TCTCCATGCAGAACACGATCTTGTGGAATCTCTTCATCCAGAGCATCGAC
AAGTTACTCCTGTATCTGATGACCTGTCCGCAGAGAGCCTTCTGGGGAGT
GACCATGGTGCAACTGATTGCTTTGATCTACAAGGATCAGCATGTGAGCA
CTCTGCAAAAACTACTTAGCCTCTGGTTCGAAGCCTCTCTGTCGGAGAGC
TCTGAGGATAATGAGAGTAATACCTCGCCCCCCAAACAGGGCAGTGGCGA
TTCCAGCCCCATGCTGACCTCTGATCCTACCTCTGATTCCTCGGACAATG
GCAGCAATGGCCGTGGCATGGGCGGTGGCATGCGGGAAGGAACAGCGGCC
ACTTTGCAGGAGGTGAGCCGCAAGGGTCAGGAGTATCAGAACGCCATGGC
CAGAGTGCCAGCGGATAAGCCCGATGGCTCCGAAGAGGCCAGCGATATGA
CGGGGAACGACAGCGAGCAGCCTGGATCGCCGGAGCAATCGCAGCCCGCC
GGCGAGTCCATGGACGATGGAGATTACGAGGACCAGAGACACAGGCAACT
GAACGAGCATGGCGAGGAGGATGAAGATGAGGACGAAGTGGAGGAGGAAG
AGTACCTACAATTGGGCCCAGCCTCGGAGCCCCTAAACTTAACACAACAA
CCAGCTGACAAGGTCAACAACACTACCAACCCAACGTCCAGTGCGCCACA
AGGCTGCCTGGGCAATGAGCCATTCAAGCCACCACCTCCTCTGCCAGTCA
GAGCCTCCACCTCGGCACACGCTCAAATGCAGAAGTTCAACGAATCGTCC
TACGCGTCCCACGTATCTGCGGTCAAATTGGGCCAAAAGTCCCCACATGC
CGGCCAGCTCCAGCTGACCAAGGGCAAGTGTTGCCCACAGAAGCGGGAAT
GCCCCTCCTCGCAGTCGGAGCTATCGGATTGCGGTTATGGCACCCAGGTG
GAAAATCAGGAATCCATTTCCACCTCCAGCAACGACGATGATGGGCCGCA
GGGCAAGCCGCAGCACCAGAAGCCTCCGTGTAACACGAAGCCACGGAATA
AACCACGGACGATTATGTCGCCAATGGACAAAAAGGAGCTTAGACGCAAA
AAACTGGTCAAGCGCAGCAAAAGCAGCCTCATCAACATGAAGGGTCTGGT
ACAGCACACCCCCACCGATGATGACATCTCCAATCTGCTGAAGGAATTCA
CCGTGGATTTCCTCCTCAAGGGTTACAGCTATCTGGTGGAGGAACTGCAC
ATGCAACTGCTTTCCAATGCGGTGCCCATTGACACATCGCACTTCTTCTG
GCTGGTCACCTACTTCCTGAAGTTTGCCGCCCAACTGGAGCTGGATATGG
AGCACATCGACACTATTCTCACCTACGATGTTTTGAGCTACTTGACCTAT
GAGGGTGTGTCCCTATGTGAGCAACTGGAACTGAATGCCCGACAGGAGGG
CAGTGACCTGAAGCCCTATCTAAGGCGAATGCACTTGGTGGTGACGGCCA
TCCGGGAGTTCCTCCAGGCCATTGATACGTACAACAAAGTGACTCATCTG
AACGAGGACGACAAAGCCCATTTGAGGCAGCTTCAGCTGCAGATTAGCGA
AATGTCCGATCTGAGGTGCCTTTTTGTGCTTCTGCTGAGGCGTTTCAATC
CCAGCATTCATTCCAAGCAGTATCTTCAGGATCTGGTGGTTACCAATCAC
ATCCTCCTACTCATTCTGGACAGTTCGGCCAAACTTGGTGGATGTCAAAC
CATTCGCCTGTCGGAGCACATAACACAGTTTGCCACGCTGGAGGTGATGC
ACTACTATGGCATTCTGTTGGAGGACTTCAACAACAACGGAGAGTTTGTC
AATGACTGCATCTTCACCATGATGCATCACATCGGTGGCGATCTGGGCCA
GATTGGGGTTCTATTTCAACCAATTATTTTGAAAACCTATTCAAGAATTT
GGGAAGCGGACTATGAACTGTGCGATGACTGGTCTGATCTTATCGAGTAT
GTGATTCACAAGTTCATGAATACTCCTCCGAAGTCGCCACTCACCATTCC
TACAACTTCCTTGACGGAAATGACCAAGGAACACAACCAGGAGCATACCG
TTTGGTAAAAGCTTTCTAGACCAT
BS27922.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tim-RN | 2673 | CG3234-PN | 1..2673 | 86..2758 | 13365 | 100 | Plus |
| tim-RL | 4194 | CG3234-PL | 1..2669 | 86..2754 | 13345 | 100 | Plus |
| tim-RO | 2676 | CG3234-PO | 1..2676 | 86..2758 | 13300 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tim-RN | 3136 | CG3234-RN | 275..3016 | 17..2758 | 13710 | 100 | Plus |
| tim-RL | 5077 | CG3234-RL | 282..3019 | 17..2754 | 13690 | 100 | Plus |
| tim-RO | 3525 | CG3234-RO | 661..3405 | 17..2758 | 13645 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3503250..3504300 | 1232..182 | 5255 | 100 | Minus |
| 2L | 23513712 | 2L | 3502646..3503195 | 1779..1230 | 2750 | 100 | Minus |
| 2L | 23513712 | 2L | 3501616..3502124 | 2429..1921 | 2545 | 100 | Minus |
| 2L | 23513712 | 2L | 3501362..3501561 | 2627..2428 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 3504361..3504526 | 182..17 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 3502414..3502557 | 1923..1780 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 3501168..3501299 | 2758..2627 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:02:44 has no hits.
BS27922.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:46 Download gff for
BS27922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tim-RN | 811..3550 | 17..2756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:03 Download gff for
BS27922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tim-RN | 275..3014 | 17..2756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:03 Download gff for
BS27922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3501363..3501561 | 2428..2626 | 100 | <- | Minus |
| 2L | 3501170..3501299 | 2627..2756 | 100 | <- | Minus |
| 2L | 3501618..3502123 | 1922..2427 | 100 | <- | Minus |
| 2L | 3502416..3502557 | 1780..1921 | 100 | <- | Minus |
| 2L | 3502646..3503193 | 1232..1779 | 100 | <- | Minus |
| 2L | 3503251..3504299 | 183..1231 | 100 | <- | Minus |
| 2L | 3504361..3504526 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:46 Download gff for
BS27922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3501170..3501299 | 2627..2756 | 100 | <- | Minus |
| arm_2L | 3501363..3501561 | 2428..2626 | 100 | <- | Minus |
| arm_2L | 3501618..3502123 | 1922..2427 | 100 | <- | Minus |
| arm_2L | 3502416..3502557 | 1780..1921 | 100 | <- | Minus |
| arm_2L | 3502646..3503193 | 1232..1779 | 100 | <- | Minus |
| arm_2L | 3503251..3504299 | 183..1231 | 100 | <- | Minus |
| arm_2L | 3504361..3504526 | 17..182 | 100 | | Minus |
BS27922.pep Sequence
Translation from 16 to 2757
> BS27922.pep
MSRVRQLHNHIWNNQNFDKVKSVMDWLLATPQLYSAFSSLGCLEGDTYVV
NPNALAILEEINYKLTYEDQTLRTFRRAIGFGQNVRSDLIPLLENAKDDA
VLESVIRILVNLTVPVECLFSVDVMYRTDVGRHTIFELNKLLYTSKEAFT
EARSTKSVVEYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETHAHC
VMPMMQSMPHGISMQNTILWNLFIQSIDKLLLYLMTCPQRAFWGVTMVQL
IALIYKDQHVSTLQKLLSLWFEASLSESSEDNESNTSPPKQGSGDSSPML
TSDPTSDSSDNGSNGRGMGGGMREGTAATLQEVSRKGQEYQNAMARVPAD
KPDGSEEASDMTGNDSEQPGSPEQSQPAGESMDDGDYEDQRHRQLNEHGE
EDEDEDEVEEEEYLQLGPASEPLNLTQQPADKVNNTTNPTSSAPQGCLGN
EPFKPPPPLPVRASTSAHAQMQKFNESSYASHVSAVKLGQKSPHAGQLQL
TKGKCCPQKRECPSSQSELSDCGYGTQVENQESISTSSNDDDGPQGKPQH
QKPPCNTKPRNKPRTIMSPMDKKELRRKKLVKRSKSSLINMKGLVQHTPT
DDDISNLLKEFTVDFLLKGYSYLVEELHMQLLSNAVPIDTSHFFWLVTYF
LKFAAQLELDMEHIDTILTYDVLSYLTYEGVSLCEQLELNARQEGSDLKP
YLRRMHLVVTAIREFLQAIDTYNKVTHLNEDDKAHLRQLQLQISEMSDLR
CLFVLLLRRFNPSIHSKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSE
HITQFATLEVMHYYGILLEDFNNNGEFVNDCIFTMMHHIGGDLGQIGVLF
QPIILKTYSRIWEADYELCDDWSDLIEYVIHKFMNTPPKSPLTIPTTSLT
EMTKEHNQEHTVW*
BS27922.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tim-PN | 890 | CG3234-PN | 1..890 | 24..913 | 4673 | 100 | Plus |
| tim-PL | 1397 | CG3234-PL | 1..889 | 24..912 | 4662 | 100 | Plus |
| tim-PO | 891 | CG3234-PO | 1..891 | 24..913 | 4661 | 99.9 | Plus |
| tim-PP | 1398 | CG3234-PP | 1..890 | 24..912 | 4650 | 99.9 | Plus |
| tim-PM | 1131 | CG3234-PM | 1..890 | 24..912 | 4650 | 99.9 | Plus |
