BS27923.complete Sequence
2228 bp assembled on 2013-11-25
GenBank Submission: KX801546
> BS27923.complete
GAAGTTATCAGTCGACATGAGCTCCGTAAATAAAATAAAGCTTAACGAAA
ACAACAAGATGCACTCTTTTGGGAACTGGGAGCGGTGCCGGAATCTGGGA
GAGGGCGGATTCGGCCTAGTGATCCATTGGCGAAACCGAACAACGGGCCG
TGAAATTGCCACCAAGCACATAAAGGAGATGGGGGCCCTGAGTGCCGATC
AGCAAGTCAAGCTCAGCGAGCGTTGGAACAAGGAGCTGAACTGGTCTCGT
CAGTTTAAAAACTTTCCCCATATTGTGGCTGGCGTGGACATCGAGGATCC
GGACTTTTTGGAGTACCTGAATGGCATGTTTAGTGCCAAGTTGCCTGTTA
TTGTGCTGGAATACTGTAACGGTGGAGACGTGAGGAAGCGTCTGCAGAGC
CCGGAGAATGCTAATGGTCTGACGGAGTTCGAGGTGCGGCAGATACTGGG
AGCCCTACGTAAGGCCCTACATTTTCTGCACTCGCAGTGTGGGATTTGCC
ACCGCGATTTGAAGCCGGACAATATAGTAATCCAACGTGGAGTTGATGGC
AAAAAAATCTATAAGCTAACCGATTTTGGACTCGCCCGAGGAACTCCCGA
CCAGACCATGGTGCAGAGCGTGGTGGGCACCCGACATTACTATGCCCCAG
AAGTGGTGGAAAATGGTTTTTACAACTCGACCGTGGATTTATGGTCCTTC
GGAGTAATTGCCTATGAGCTGGTCACTGGTGAGCTGCCCTTCATCCCCCA
TCAAACCCTTAAAAACATTATACTCAATCTGATAAAAAAGCCCGCCAAAT
GCATTGCTATCACAGAGGATCCGGAGGATAACACTCGTTTCGTGAATCAG
TTTGAACTGCCACAGACGCACCATCTGTCGCGGCCCTGGGCTGCTCAGTT
CACCAAATGGCTGGCAAGCCCGTTAAACTCAAACTACAAGGAACGCGGTC
AACTAGCAGCTAATAACGTTCCAGTCGTCTTCGCTGACCTGGACAAAATA
CTCAATATGAATGTGCTAACTATTTTTGCTGTTAACAACTGCGAACGACT
TGAGTATGCGGTCTCTGCGGAGATGACTATGAAGGATCTAATTGCGTTGA
TTGTCCTGGACACTGGAATGGACGAAAAGGAACTGTACTTCGTGCTGCCC
ACTTCCCATCCGCACAAAACGATTACGCCTAAAAGTACGCCCTTGCAGCT
GTATGTGGAGGAGTGGAGTGACACAAGCAAAGATTCACGAAAGTGGACTA
AGCGCAGCAATCCACCTGTGATGTTGTACATCTTTCAGGTCAAGAAAGAG
TGTGACTACAAAATACCTGAACCCATTCTATCAATTCTTTCTCGAAAGTT
TATCGCTAACAAATTTAAGACGAAGGAAAGATGGCTGCAAAAACGTGTTG
TCTTGGATATGCTCTACGTGCTAACCAAAGAGCAAGCAAGATACGAAATG
CTCGTGTCAGGAATAAACGAGCGAGCGTTGTCGTTGGAAGACGAAATGAT
GGAAAACTCGTTTATAGACAGCATCGATAAGCAGCGTATCATAATCTCCT
TTGCCTATGATCAGCTAACAAGCTTGCTAAAAGAAGCCCAAGCAAAGATT
CCGTCCCGCCAGCTTATCAGCAGTGCACAGTGGGAGAAGCTTAACCGCAA
TTATAATTTCATTATACAAAGCGCAAAATCAATTAGGTCTTTCTTGGAAG
CCTGCTTGCGGGAAGCCAAGGACATGGTTAAAACCACCAATCAACTACGG
AAAGAAGTTTGCGAGAAAGACCTATTCGATTGCGCTCGATTTTATAAGAA
ATATCTCTGCAATGGTGCGATAATTTCGCCATCAGAGTTAAATAATGACG
CCGAGGAATTCGCAAAATCTCGTTTCAAGTTATATAACGAGGGCGAGGCT
AGACATCTGCCCAAGTCTATCGATCACATGCATTACTTATATTTTAAGAC
CAAGGAGTCCATCCCGGTCCTTCTACAACAATTTTGCGACATCAAGAAGG
AGATATTTCAGATTAACTTGCAGATGTTGATGTCAGCCTCAAGCACACCA
CCTCCGAAGCTTGAGCTAAGCGCAGCGATGGACCGCCTAGCTATAAGCTC
TGGCTCACCCAGCTCGGATCCATTTGACTCTCTACGCACGATAAACGCTA
TCGAAGAGGCAGAAAGGATTAACAACATACTTGTTAATGAAATGAAAATT
GATCACTATTAGAAGCTTTCTAGACCAT
BS27923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ird5-RB | 2154 | CG4201-PB | 1..2154 | 59..2212 | 10770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ird5-RB | 2488 | CG4201-RB | 60..2255 | 17..2212 | 10980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16047358..16048812 | 1612..158 | 7275 | 100 | Minus |
| 3R | 32079331 | 3R | 16046669..16047065 | 2178..1782 | 1985 | 100 | Minus |
| 3R | 32079331 | 3R | 16047133..16047306 | 1782..1609 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 16049221..16049362 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:36:01 has no hits.
BS27923.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-25 13:52:40 Download gff for
BS27923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 60..2255 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:01 Download gff for
BS27923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 60..2255 | 17..2212 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:01 Download gff for
BS27923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16046580..16046613 | 2179..2212 | 100 | <- | Minus |
| 3R | 16046669..16047064 | 1783..2178 | 100 | <- | Minus |
| 3R | 16047133..16047302 | 1613..1782 | 100 | <- | Minus |
| 3R | 16047358..16048811 | 159..1612 | 100 | <- | Minus |
| 3R | 16049221..16049362 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-25 13:52:40 Download gff for
BS27923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11872302..11872335 | 2179..2212 | 100 | <- | Minus |
| arm_3R | 11872391..11872786 | 1783..2178 | 100 | <- | Minus |
| arm_3R | 11872855..11873024 | 1613..1782 | 100 | <- | Minus |
| arm_3R | 11873080..11874533 | 159..1612 | 100 | <- | Minus |
| arm_3R | 11874943..11875084 | 17..158 | 100 | | Minus |
BS27923.pep Sequence
Translation from 16 to 2211
> BS27923.pep
MSSVNKIKLNENNKMHSFGNWERCRNLGEGGFGLVIHWRNRTTGREIATK
HIKEMGALSADQQVKLSERWNKELNWSRQFKNFPHIVAGVDIEDPDFLEY
LNGMFSAKLPVIVLEYCNGGDVRKRLQSPENANGLTEFEVRQILGALRKA
LHFLHSQCGICHRDLKPDNIVIQRGVDGKKIYKLTDFGLARGTPDQTMVQ
SVVGTRHYYAPEVVENGFYNSTVDLWSFGVIAYELVTGELPFIPHQTLKN
IILNLIKKPAKCIAITEDPEDNTRFVNQFELPQTHHLSRPWAAQFTKWLA
SPLNSNYKERGQLAANNVPVVFADLDKILNMNVLTIFAVNNCERLEYAVS
AEMTMKDLIALIVLDTGMDEKELYFVLPTSHPHKTITPKSTPLQLYVEEW
SDTSKDSRKWTKRSNPPVMLYIFQVKKECDYKIPEPILSILSRKFIANKF
KTKERWLQKRVVLDMLYVLTKEQARYEMLVSGINERALSLEDEMMENSFI
DSIDKQRIIISFAYDQLTSLLKEAQAKIPSRQLISSAQWEKLNRNYNFII
QSAKSIRSFLEACLREAKDMVKTTNQLRKEVCEKDLFDCARFYKKYLCNG
AIISPSELNNDAEEFAKSRFKLYNEGEARHLPKSIDHMHYLYFKTKESIP
VLLQQFCDIKKEIFQINLQMLMSASSTPPPKLELSAAMDRLAISSGSPSS
DPFDSLRTINAIEEAERINNILVNEMKIDHY*
BS27923.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ird5-PB | 717 | CG4201-PB | 1..717 | 15..731 | 3743 | 100 | Plus |
| ik2-PC | 720 | CG2615-PC | 12..369 | 21..390 | 324 | 28.9 | Plus |
| ik2-PB | 720 | CG2615-PB | 12..369 | 21..390 | 324 | 28.9 | Plus |
| Pak-PJ | 704 | CG10295-PJ | 430..635 | 21..253 | 251 | 31.6 | Plus |
| Pak-PE | 704 | CG10295-PE | 430..635 | 21..253 | 251 | 31.6 | Plus |
