BS27928.complete Sequence
3665 bp assembled on 2013-11-09
GenBank Submission: KX803624
> BS27928.complete
GAAGTTATCAGTCGACATGCTTTTGAAATTCACAAAAACCAGTGGCGCTG
GACCCTCGGCCGTACCGCTACTGACCACCGCCCCCGCGACAGTCACCAGT
TCGGCGTCCATGCAGGCAACAACAACAAGTTACGCGGCCCGTGGAACAGG
CATGAGAATGACCATGTCCACCAATTCCACAATGAGTGCGCGTATACATC
GAAAAGGATTTCGCATACCATCGAAAAGACAGCCGGGTAAGGGATTGCCC
GGCAAGTTGCACACCATAACCAGGACGGGTCCTGGCAAAATGGTTCCTGG
GAAGCGAATACCACAGCGACCCCATCCGCCGCCCTGCGACAACTCGAACG
ACAGTGGGCTGGGTTTCGATCAGCACACGGAGCTGAGATCCTCGGCAGGA
GCTGGGGGCGTTACTGATCCGGCGGCCAATGGAGGCAGTGGCTCCAACTC
TGGCCAGCGATCCAGTTTGCTGGTCAATAGCGCTTTAACCAACACAGTGG
CTGCTGCAGCAGCCGCAGCAGCTGCCGCGGTGGCCAGCAACACGTTGCAG
CAGCATCAGCAGCACCATCAACAGCAGCAGCAGCAACAGCAGCAACAACA
GCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAACAACATTCAC
CGCAGCAGCATTTAATCAGAGCGATACCTGTATCAAGATTCATATCGGCC
AGGAATGTCACGCGTGTGGCGAACAAACGTCAACCCACTACACCGCTGAA
CAGCGTCGCCAGCTCCAACGATGGCCAGGTGCAGCTGGAGATTTTGTCGC
AGCCGGAGCAACAGCACCGGGCACGCTATCAAACGGAGGGCAGCCGCGGT
GCCGTCAAGGATCGCAGCGGCAATGGATTCCCGATCGTCCGACTGACCGG
ATACGATAAGGTTGCCGTCCTCCAGGTCTTCATCGGCACGGACATTGGAC
GCGTGGCACCGCACATGTTCTATCAGGCCTGCAAGGTTGCCGGCAAGAAC
TCGACGCAGTGCAACGAGAAGAAGGTCGACGGCACCATGGTCATTGAGAT
CGATTTCAAGCCCGAAACGGACATGACCATCACATGCGATTGCGTTGGAA
TCTTGAAGGAACGCAATGTGGATGTGGAGCACCGATTTCCCGAGCATCTG
GCGCAAAAGAACAAGAAGAAATCGACTCGCTGCCGGATGGTGTTCCGCAC
CCAGCTGACCCGTGACGATGGCACCACCGAGACCCTCCAGGTCTGCTCGA
ATCCAATCATCTGCACTCAACCACCTGGCGTGCCGGAAATATGCAAGAAA
TCCTTAAACTCATGTCCCGTTGATGGCGGCCTCGAGCTTTTCATTATCGG
CAAGAACTTTCTGAAGGACACACACGTGGTGTTTCAGGAGACATACGACA
GCGTCAACGGTGACGATCCGGCCACGGAAATTGCAGTGCGCCAGCAGCTC
ATCGGCGGTACAGCCGCTCTTTGGGAACAGAGTGTTCTGCCGGATAAGGA
GTACCTTCACCAGACTCATCTGATATGCACGGTGCCACCGTATCTGCACC
AGAACATCCTGAAACCGGTCCAGGTTCAAGTGTCGATCGTCTCCAGCGGC
AAGAAGAGCGAACCGCATACGTTCACCTACACGGCCAAGGGACAGTACAC
GACGCTGGCGGCGGCCAGCACGTTAAGTAACACAATCCACGCCCAAGATG
TGAGCGGTTTCATGGACACCACATCAGCGTCCAATGCGAGTGGCTCCAGT
GGTTGGAGTGCGGCAGGCGGTTCCGGCAACAATACATCTACAGGCGATAA
TGTGGAGGCCAAACACGAGATCGATTCGGGCATGATGCCTCCGCCCATTA
CCACCCAAATACCGATGGGCGTTCGACGCTCCTCGCTGCCCAGTGTCACA
CCCATGATCACGGACCAACAGCTGGTCCATCTCAACGCAGTGGCGGCCAG
TGCCGAGGCCCTGAAGACGGAACTCGACGACAGCAACTCGCATAGCCCAC
TGACCGGTGAATCCACACCGGATAGCCCCAACGCAGCCTTGCAGTATCAT
CGCTTTGCACGAAAGCCCAGCCTGGACACCATTATGTACGATCAGTCGAA
CAGTCTGCCCGGTTTCCCGACCGTTGTGGCGCCGGCTACAGCTGCCGCCG
TGGCCGCTGCAGTTGATATTGATCCGACGGCGGTGGCCGTGGCGGTGGAA
CTGGCCGTAAAAAATGAGATTGTCAAGCATGTCGTACAGCAGCACCAGCA
GATGCAGGAGCAAATGCACGAGCAGCAGCAGCAGCAACAGCAGCAGCAAC
AACAACAACAACAGCAGCAACAACAACAACCCCAACAGCAGCAGCAGCAA
CAGGTGCACAAGTTTATTGACGAGCTGACCAAATCCACATCGGTGGTTTC
CAGCAATGGTACCACCGAACCAGCTCTGTTCACCACCTCGGCGGTGATCG
ATCATGCCCTGACCGATATTCTGCAGGCCAAAGTTGGCATTGCGCCGCCC
AATGTGGTGCTGGAAAGGAGTTTGTCCCTAAGCTCCACAAATTCCAGCAG
CTCCATGAGCGGCAGTGAGAGTTCGCCGAATAGTTCACCTTTGACGCAGG
ATATCATACTCAATTCAGAACCGGCAGCAGCTCTGGCCGGAGCTGCTGCC
TTGGGTGGCCCGGCGCCTGTCGATGTCACCGGTGGTCTGTCCACCGATAT
CATTATGAATCCCGCCGTTTCACCATCGACTATTTTGTGCTCCGCAAATG
GAGCGGCCACTGCCGTAGTGCCGAATATACTCGCACCTCACCAAGTGACC
ATGGCCAACTCCATTTTGAACGATATTGCCATGCAGCCGGAACCAACACA
GCAGGATGCAGCAGTAGCAGCCTTGGCGTTGAGCAACATCATGATGAGTC
CACCCACCGCGGCATCGGGTGTGGGAGTTGGTGACACACTGCCACCAACA
CCAGCTACTATGCAGCCAGAGGTCGCAGCCACTGCCACATCCACTGCGGT
CAGCAACATGATTATTAAGGCGGCGGCGGACTTTATAACCACCCAGGAGC
AGGAGCAACACCACTACCATCACCACGGTCGCATCCACTCCCATTCGCCA
CAGGCAGCTGTCGGAGTGAGCGGTAATCCTGCCGAGACGGCATCGGATCC
ATTGGTTGACCTGCTATTGAACCACTCAAACACACCAGAAACAGCGGCTG
CTGCCGCTGCCGCAGTAGCTGTAGAAGCAGCCAACTTCCAGTCGATGAAT
CACAGTCACCACAGCCATCATGGTCATCATGGTCACAGTCACGGCCACGG
CCATAGTCGCGTCACAGGACACGTATCCGGGCATGTGACCAGCCACCATC
GTGGTCACCACTTGCCGGTGGTGCCGCCGACACCACAAGAATCTCTGATC
GTTGCGCTGGCCAGCGAGAATGCTCTGCAAAAGTCGGTGGCCACCGCCGC
AGTGACCACCAATGGAGCAGTGATGACGCAACAGGCATCTGCCCCGAACA
CAGCGGGTAGCATACTTCCGGCAGCGGTTGGAGCGGTAGCTGCGGCGGCC
GCCGTGGCGGTGCAGCCGCCCATTCCCCAGGAGCTGACCACGATGTCGGA
TCAGGATCTGATCAGCTACATCAACCCGAGCACCTTTGATCAGCTTTAAA
AGCTTTCTAGACCAT
BS27928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NFAT-RD | 3633 | CG11172-PD | 1..3633 | 17..3649 | 18165 | 100 | Plus |
| NFAT-RH | 3747 | CG11172-PH | 247..3747 | 149..3649 | 17505 | 100 | Plus |
| NFAT-RC | 3747 | CG11172-PC | 247..3747 | 149..3649 | 17505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NFAT-RD | 5243 | CG11172-RD | 713..4346 | 17..3650 | 18170 | 100 | Plus |
| NFAT-RH | 5049 | CG11172-RH | 651..4152 | 149..3650 | 17510 | 100 | Plus |
| NFAT-RC | 5935 | CG11172-RC | 626..4127 | 149..3650 | 17510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13660738..13662686 | 1696..3644 | 9745 | 100 | Plus |
| X | 23542271 | X | 13654782..13655205 | 686..1109 | 2120 | 100 | Plus |
| X | 23542271 | X | 13649654..13650067 | 274..687 | 2070 | 100 | Plus |
| X | 23542271 | X | 13655528..13655775 | 1266..1513 | 1240 | 100 | Plus |
| X | 23542271 | X | 13655848..13656034 | 1511..1697 | 935 | 100 | Plus |
| X | 23542271 | X | 13655295..13655459 | 1101..1265 | 810 | 99.4 | Plus |
| X | 23542271 | X | 13625457..13625590 | 17..150 | 670 | 100 | Plus |
| X | 23542271 | X | 13649374..13649501 | 147..274 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:34:58 has no hits.
BS27928.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:52 Download gff for
BS27928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NFAT-RD | 713..4343 | 17..3647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:33 Download gff for
BS27928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NFAT-RD | 713..4343 | 17..3647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:33 Download gff for
BS27928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13649377..13649501 | 150..274 | 100 | -> | Plus |
| X | 13625457..13625589 | 17..149 | 100 | -> | Plus |
| X | 13649655..13650067 | 275..687 | 100 | -> | Plus |
| X | 13654784..13655204 | 688..1108 | 100 | -> | Plus |
| X | 13655303..13655459 | 1109..1265 | 100 | -> | Plus |
| X | 13655528..13655775 | 1266..1513 | 100 | -> | Plus |
| X | 13655851..13656034 | 1514..1697 | 100 | -> | Plus |
| X | 13660740..13662688 | 1698..3647 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:52 Download gff for
BS27928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13549884..13550067 | 1514..1697 | 100 | -> | Plus |
| arm_X | 13549561..13549808 | 1266..1513 | 100 | -> | Plus |
| arm_X | 13519490..13519622 | 17..149 | 100 | -> | Plus |
| arm_X | 13543410..13543534 | 150..274 | 100 | -> | Plus |
| arm_X | 13543688..13544100 | 275..687 | 100 | -> | Plus |
| arm_X | 13548817..13549237 | 688..1108 | 100 | -> | Plus |
| arm_X | 13549336..13549492 | 1109..1265 | 100 | -> | Plus |
| arm_X | 13554773..13556721 | 1698..3647 | 99 | | Plus |
BS27928.pep Sequence
Translation from 16 to 3648
> BS27928.pep
MLLKFTKTSGAGPSAVPLLTTAPATVTSSASMQATTTSYAARGTGMRMTM
STNSTMSARIHRKGFRIPSKRQPGKGLPGKLHTITRTGPGKMVPGKRIPQ
RPHPPPCDNSNDSGLGFDQHTELRSSAGAGGVTDPAANGGSGSNSGQRSS
LLVNSALTNTVAAAAAAAAAAVASNTLQQHQQHHQQQQQQQQQQQQQQQQ
QQQQQQQQQHSPQQHLIRAIPVSRFISARNVTRVANKRQPTTPLNSVASS
NDGQVQLEILSQPEQQHRARYQTEGSRGAVKDRSGNGFPIVRLTGYDKVA
VLQVFIGTDIGRVAPHMFYQACKVAGKNSTQCNEKKVDGTMVIEIDFKPE
TDMTITCDCVGILKERNVDVEHRFPEHLAQKNKKKSTRCRMVFRTQLTRD
DGTTETLQVCSNPIICTQPPGVPEICKKSLNSCPVDGGLELFIIGKNFLK
DTHVVFQETYDSVNGDDPATEIAVRQQLIGGTAALWEQSVLPDKEYLHQT
HLICTVPPYLHQNILKPVQVQVSIVSSGKKSEPHTFTYTAKGQYTTLAAA
STLSNTIHAQDVSGFMDTTSASNASGSSGWSAAGGSGNNTSTGDNVEAKH
EIDSGMMPPPITTQIPMGVRRSSLPSVTPMITDQQLVHLNAVAASAEALK
TELDDSNSHSPLTGESTPDSPNAALQYHRFARKPSLDTIMYDQSNSLPGF
PTVVAPATAAAVAAAVDIDPTAVAVAVELAVKNEIVKHVVQQHQQMQEQM
HEQQQQQQQQQQQQQQQQQQQPQQQQQQQVHKFIDELTKSTSVVSSNGTT
EPALFTTSAVIDHALTDILQAKVGIAPPNVVLERSLSLSSTNSSSSMSGS
ESSPNSSPLTQDIILNSEPAAALAGAAALGGPAPVDVTGGLSTDIIMNPA
VSPSTILCSANGAATAVVPNILAPHQVTMANSILNDIAMQPEPTQQDAAV
AALALSNIMMSPPTAASGVGVGDTLPPTPATMQPEVAATATSTAVSNMII
KAAADFITTQEQEQHHYHHHGRIHSHSPQAAVGVSGNPAETASDPLVDLL
LNHSNTPETAAAAAAAVAVEAANFQSMNHSHHSHHGHHGHSHGHGHSRVT
GHVSGHVTSHHRGHHLPVVPPTPQESLIVALASENALQKSVATAAVTTNG
AVMTQQASAPNTAGSILPAAVGAVAAAAAVAVQPPIPQELTTMSDQDLIS
YINPSTFDQL*
BS27928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NFAT-PD | 1210 | CG11172-PD | 1..1210 | 1..1210 | 6189 | 100 | Plus |
| NFAT-PH | 1248 | CG11172-PH | 83..1248 | 45..1210 | 5977 | 100 | Plus |
| NFAT-PC | 1248 | CG11172-PC | 83..1248 | 45..1210 | 5977 | 100 | Plus |
| NFAT-PB | 1457 | CG11172-PB | 368..1457 | 177..1210 | 5062 | 92 | Plus |
| NFAT-PA | 1419 | CG11172-PA | 330..1419 | 177..1210 | 5062 | 92 | Plus |
| NFAT-PB | 1457 | CG11172-PB | 83..269 | 45..234 | 938 | 96.8 | Plus |
