BS27929.complete Sequence
3932 bp assembled on 2013-09-16
GenBank Submission: KX803718
> BS27929.complete
GAAGTTATCAGTCGACATGGCCAAACCAAAGGCGAAGGCGGGCGAGACGG
AAAAACCCAAAACCAAGGCAGCGGGAGGAAAAAAGCGTCTGGCGGCCACC
AAAAAGACGAAAAAGGATGGTGAGAAGGAAAACGAGGATCAGAGCGTGGC
CACCACCTCAGACACATCCGCGGAACTCATGTACGCGATAATGCGACAAG
CCGAGCTCAAGGAATCCCTGCACAAGCGCTACTCAAAGGAGATGCAGCAA
CTGTACGCAAAGATGGGACACGAGTCCTTTCGCAAGGCCTTCATCAACGT
GTTGAAAGCCGTCCTAGGGGCTGAGGAGGGCAATGAGAACGCAAACATGG
CCCTCAACTTCTGCGCCACTTTCGTCACCAGCTCAGATTCGGATGGTACT
GAGCCCATGCTGGCCGAAACCTTTCATTGGCTGCTTACGACCTATTCGAG
CAACCCGCACATACGTTATCGCATCTGTTACTTTGTGAATCTTATACTTA
AGGAGCTCGGACCCAATGCCGCCTTGGATGACCACCAGTGCGATGATATA
CTGGAAGCAATGCTGGACCGGGTGAAGGATGTGTCCGCCAGTGTTCGCAA
ACAGGCCGTGTTGGCCATGCAGCGCCTTCAAAATCCAGACAATCCCAGCG
ACGTCGTCGTGGGCGCGTACATGTACCATCTCACATCCGATCCCTCGCCC
AACGTGCGTCAGTGCATCATCACGTGCATGGGCCGAAATTATATTACCAT
TCCGCACATCCTGGAGCGTCTTTGGGATGTCGACGAGAAGGTGCGCCGAC
ACACTTACGTCAACATGTGCAACTATCCGGTGCGCTCTTACAAGGTTGCC
CAGCGGCTTACCCTGCTGGAGCAGGGACTTAACGATACATCGGCAACCGT
GCGCAAAACAGTGATCAACTTCATGCTAAAGACGTGGATTGAATCCTATC
AGCAAAACTACGTCGCTCTGATAGCGGCTCTCAAGCTGGACTCGAATGAA
GAAGAACTGCTGCGCTTTCGACGCGTGGCCAAGCAAATGCTTAGAGTGAT
CTTCCAGCAAACGGACATCAAGCAACTCATCGATCAACTGCCGTTAAGCG
AAGACTGCGAGCTGCACCGCTGCATCCCACACGATTCAGTAACCGTAGAG
CTGTTGTTATATTGGCAGTGTCTTAGCGAATATCTGGAGACGGAAGCGCC
CGAAATCGAATCGCTGTTGCCGGAACTTAGTGTCTTCTGCACCTATATGG
ATAAATTCTGCCAGTTTCAAAAGCCCGATATGGACAAGTTTGCCCAGGTG
GAGTTCCAGAACATGCTCCTCTCGCTGGTGGAGATATTAGAGACCTACGA
TCTAGGCGACGAGATCGGACGCGGAAATATGCGTCTGCTGATCACCAATC
TGCTAAAAGACTGTCTATTGGACCACAAGATCGTGCGCGTGCTGGTGCGC
TGCATGGAGCAACTGATCACCGACACTAACGATCGTATACAATATTTTAT
CGAGATCATATACGAGCTATGCGAACTGAACACCAAGCAGAACGACCTGA
TTCACGATCGAAGTTTGATCAATAAGTTGCTGGACGACTTGGACACTCCG
CTAAAAATGAAGATCTCTTCCCTGAAAGTTAAAATTCTTGAATTGGAAGA
ACTGGAGGGTAATTATGTGCGCCAGAGGGAGTACATACGGGCGCAGTCCG
TAAACGATGAAAAGATCGCTGTCACCGAAGAGTACACCGAGCTAATAAGG
CCGCTGCTGGAGAAGCACGGCGTGATTGAAATGCCCACCCGACCGAAGCT
CTCCAAGCAAGAGCGCGTGCTGAAGGGTCTCTACATCTCCTACTACATGA
CCGCCTCGCCGCACGTCCACAAGCTGACGCCAAGTCTTTGCCAGTTGTAC
AAGGACTTCATTTGCCGTTACCTACCGTGCGCCGAAGTAGACATCTTTGA
GTGGTCCATTAAATGCGGCACCACCTTTAGCATTTTCTACGAGGCCTACA
GCAGAGAGGTCTTCGAGGTAGTGGTGGTGCAGTTTTGCAAAAACAATAAC
GTCCGTCTGTGCGAAGCGTCGGCCAATTGCATTTTAGAGCTATTGGATCG
CTATGGAGTGGATTACTTCAACGATCTTAACCAGACCGGAGGTTCACTGT
CAAAGACGAAGCGGCGACAACTGTACACGATGCAGGAGCTATACGATGAC
GACGATGGCAGCCAGTCGCAGAACAACGAGCAGAATAGTGACATCCTCGT
GGTACTGGGCCACTATTTGGAGCGAGTGCAGCACAGAGGTGTAGGGATGG
CAATCGTTCGCGGCCTCTGTCGCTTAGTGCTCCGTGGCCACGTCGACGAT
CGCACGGATGTGCTGGAGCTACTGCTCAAGCGGTACTTTAACCCAAACAC
CGAGCCTATTATCAACCAGGTGCTGGGCTTATTCTTCGAAGAGCTGAGAC
GCCTGAACAAGCATAGTCTCCTACAGCCGTGCTTCCTACCCACCGTTTGG
ACCTGCAACTATGACTCGCCGCTTCACGGCGTCCAACCTGAACACTTGAC
CAAGTTCTTCCTCGAAATGACAGTGCAGGAGATGAGCACGCCACAAACGA
ATATCCACAACAAAATAGCGATAAGTTTTCTGCAATACATTCAGAACTAC
TTTACGGAGCGCAAAGATATGTGCCGTCTACTGGCCAAGGAACTAACAAA
TCTATCAATAAACGTATTGAACGGTCCGGAGGTGAAGGCTGAACTGCTTG
CGCTGGCGGAGAATCTGATTCAGAGCGAATTAGATCCGCGCATGATCAAG
TGCATTCAGAACTTCAAGCTGGTGGTAAACGGCAGTTTCAATCCGCCACC
TCGTCGGAATCCGGATGAAGGCGAAAGTGATGAAGAGTATGAAACGGCTA
CTGTGACCACTGCAGAATCGGAAACTGCAGTGCCAGCACAGTCGCAACCT
CCTGTTACCGAAGAATCTCCGAACGATGTGACGCAATCTGCTGCCATAAC
CGCAGTAGACGCTACTGAAACTCCAAAGGCAGCCGCACCGCCAGCGCCAG
TCCCGGAACCCATTGTAACCACCTTTGGGAAAGATAACATTGTGGGAATA
CGTCACCTGCGTCGCTCAATGGCCATAAGCCATTCAGATGCCGAGAGTTT
ATTAGGACCGCAGTCGCCCAATCCAGAGGAATCCACTGAGTCTGAAGCGG
TAGAGACATCCAAACAAAATTTACGCCAGCCGCAAATGAGACGTCGCCTC
GAAATGGCAATTGCCCGGTCGTCGAAGACACCGGAAAAGCAGCCCTCCAC
TGAGGAGGAATCATCCGACGAGGAGATAAGCGAAAGTCCAAATGCAGCAA
ACAAGCGAAAGGTCGTTCATCTGGAAACGCCTCTAAGAAACGGACGCAAA
CGAGTGCTGAGGAGAAGTCCTTCAAATTCCAACTCCCGATCACTGCGGTC
AAGAGATTCAACGGCTCTCTCTTCGCCCCGCGTTTCGCCGCGGCGGAAGC
AGCAACGCCTAGACAACAGGAGTACCCGGCGACAGCAGATGACCAAAAAC
ACGAACAGTCCCACAGACAGCACCTCATCGGTCAAGGAGAACCAAATACC
TCCTGTGATTGTTATTGAGCTGGACTCCGATACAGAGTCAGAGTCCAACG
CTAAACCAGAATCAACGCCGCCTAAAAAGCCGCTCAAAAAGACGATACCT
CTAATACGATCCCGCCCCAGCTCCAGCACCCCAAAGGTGACCACGCGAAA
CGAGGCGCGCGCACAGCGGATGAATTCCAAAGTCATGACCCGTAAGCGAA
TGTCTCTCGAGATGAACCTCAGTGGCGGCCAGCTGCAAGTGTCCACGCCG
AAGCGCGTGACGCGGGCAGTGGCTTTGTCCATGAGCACGGACGGCAAGCG
CAGCAGGAGGAAATAGAAGCTTTCTAGACCAT
BS27929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-G-RG | 3900 | CG34438-PG | 1..3900 | 17..3916 | 19500 | 100 | Plus |
| Cap-G-RF | 4056 | CG34438-PF | 1..3339 | 17..3355 | 16695 | 100 | Plus |
| Cap-G-RF | 4056 | CG34438-PF | 3492..4056 | 3352..3916 | 2810 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-G-RG | 4231 | CG34438-RG | 173..4072 | 17..3916 | 19500 | 100 | Plus |
| Cap-G-RF | 4387 | CG17054-RB | 173..3511 | 17..3355 | 16695 | 100 | Plus |
| Cap-G-RF | 4387 | CG17054-RB | 3664..4228 | 3352..3916 | 2810 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13134757..13136857 | 1255..3355 | 10505 | 100 | Plus |
| 2R | 25286936 | 2R | 13133882..13134697 | 439..1254 | 4080 | 100 | Plus |
| 2R | 25286936 | 2R | 13142099..13142661 | 3354..3916 | 2815 | 100 | Plus |
| 2R | 25286936 | 2R | 13133314..13133559 | 17..262 | 1230 | 100 | Plus |
| 2R | 25286936 | 2R | 13133628..13133806 | 261..439 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:02:49 has no hits.
BS27929.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:49 Download gff for
BS27929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-G-RG | 173..4066 | 17..3910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:05 Download gff for
BS27929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-G-RG | 173..4066 | 17..3910 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:05 Download gff for
BS27929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13133314..13133559 | 17..262 | 100 | -> | Plus |
| 2R | 13133630..13133806 | 263..439 | 100 | -> | Plus |
| 2R | 13133883..13134697 | 440..1254 | 100 | -> | Plus |
| 2R | 13134757..13136857 | 1255..3355 | 100 | -> | Plus |
| 2R | 13142101..13142655 | 3356..3910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:49 Download gff for
BS27929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9020819..9021064 | 17..262 | 100 | -> | Plus |
| arm_2R | 9021135..9021311 | 263..439 | 100 | -> | Plus |
| arm_2R | 9021388..9022202 | 440..1254 | 100 | -> | Plus |
| arm_2R | 9022262..9024362 | 1255..3355 | 100 | -> | Plus |
| arm_2R | 9029606..9030160 | 3356..3910 | 100 | | Plus |
BS27929.pep Sequence
Translation from 16 to 3915
> BS27929.pep
MAKPKAKAGETEKPKTKAAGGKKRLAATKKTKKDGEKENEDQSVATTSDT
SAELMYAIMRQAELKESLHKRYSKEMQQLYAKMGHESFRKAFINVLKAVL
GAEEGNENANMALNFCATFVTSSDSDGTEPMLAETFHWLLTTYSSNPHIR
YRICYFVNLILKELGPNAALDDHQCDDILEAMLDRVKDVSASVRKQAVLA
MQRLQNPDNPSDVVVGAYMYHLTSDPSPNVRQCIITCMGRNYITIPHILE
RLWDVDEKVRRHTYVNMCNYPVRSYKVAQRLTLLEQGLNDTSATVRKTVI
NFMLKTWIESYQQNYVALIAALKLDSNEEELLRFRRVAKQMLRVIFQQTD
IKQLIDQLPLSEDCELHRCIPHDSVTVELLLYWQCLSEYLETEAPEIESL
LPELSVFCTYMDKFCQFQKPDMDKFAQVEFQNMLLSLVEILETYDLGDEI
GRGNMRLLITNLLKDCLLDHKIVRVLVRCMEQLITDTNDRIQYFIEIIYE
LCELNTKQNDLIHDRSLINKLLDDLDTPLKMKISSLKVKILELEELEGNY
VRQREYIRAQSVNDEKIAVTEEYTELIRPLLEKHGVIEMPTRPKLSKQER
VLKGLYISYYMTASPHVHKLTPSLCQLYKDFICRYLPCAEVDIFEWSIKC
GTTFSIFYEAYSREVFEVVVVQFCKNNNVRLCEASANCILELLDRYGVDY
FNDLNQTGGSLSKTKRRQLYTMQELYDDDDGSQSQNNEQNSDILVVLGHY
LERVQHRGVGMAIVRGLCRLVLRGHVDDRTDVLELLLKRYFNPNTEPIIN
QVLGLFFEELRRLNKHSLLQPCFLPTVWTCNYDSPLHGVQPEHLTKFFLE
MTVQEMSTPQTNIHNKIAISFLQYIQNYFTERKDMCRLLAKELTNLSINV
LNGPEVKAELLALAENLIQSELDPRMIKCIQNFKLVVNGSFNPPPRRNPD
EGESDEEYETATVTTAESETAVPAQSQPPVTEESPNDVTQSAAITAVDAT
ETPKAAAPPAPVPEPIVTTFGKDNIVGIRHLRRSMAISHSDAESLLGPQS
PNPEESTESEAVETSKQNLRQPQMRRRLEMAIARSSKTPEKQPSTEEESS
DEEISESPNAANKRKVVHLETPLRNGRKRVLRRSPSNSNSRSLRSRDSTA
LSSPRVSPRRKQQRLDNRSTRRQQMTKNTNSPTDSTSSVKENQIPPVIVI
ELDSDTESESNAKPESTPPKKPLKKTIPLIRSRPSSSTPKVTTRNEARAQ
RMNSKVMTRKRMSLEMNLSGGQLQVSTPKRVTRAVALSMSTDGKRSRRK*
BS27929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-G-PG | 1299 | CG34438-PG | 1..1299 | 1..1299 | 6676 | 100 | Plus |
| Cap-G-PF | 1351 | CG34438-PB | 1..1351 | 1..1299 | 6613 | 96.2 | Plus |
