BS27930.complete Sequence
6353 bp assembled on 2013-10-14
GenBank Submission: KX801672
> BS27930.complete
GAAGTTATCAGTCGACATGGAGCTGGCCCACACTTTGATCCTTAATGAGG
ATGCTCTCAAGCAGTTGCCCGAACACAAGCGGCCTGTGTTCGAGTTGGAA
TGGCTGCGCTACTTGGAGAAGGCCCTGCCACTGGTGTCCAAAGCGGAGAT
CAAGGCGAGCCAGAAGAAGCTGGTGCAGCAGCTCTCTGAAAGAATCCAGG
GCGCACCAGGTCCGCCCATTCGTAAGCTCATTGCTAGCGCGTTGGCCACG
CTATTCTCCGTTGGTGACACCTTCATGCTCTTCGACACCGTCAACGCCTG
CAATGACATCCTGAAGAACAAGGACGACTCGCCCAGCTACTTGCCCACAA
AGCTTGCCGCCATTTGTGTGCTGGGCTCTATGTATGAGAAGCTGGGCAGG
ATGATGGGCCGCACCTACGAGGATACGGTGCAGATCCTTATTCGAACGCT
TCGCAACGCTGAGTCGCAGGCGCGGATTGAGATCATGCACACGCTGGAGA
AGGTGAGCGCTGGCATGGGCACAGCCATTGCCAACGTGCACAAGGATATT
TACAAGGCGGCCAAGCATTGCCTGTTGGACCGAGTTATGGCTGTTCGAGT
GGCTGCAGCCCGCTGCATCCTTAAAATGATATACAGTGCACCATTCCTGT
ACCAAACGGAGCTGGAAAGCTTGGGAACATTGTGTTTCCGAGCCTTCGAC
GGCAGCAACTATGAAGTGCGATGTGCGGTAGCTCAGCTGCTGGGAACACT
TCTAGCCTATACTCAACAACTGGCAGAAGCGGCAACAAGCAAAAAGAAAC
AGGGACAAGCGGTGGCTATTCAAGCGGGCAAGGGAGCTACCCAACGCTTG
GTTTCCCTGGATGAAGCTCTGGGCATTCTCATGTCAGGTTTCCTTCGTGG
TGGCGCATCTTTTCTCAAGGGTACCGGAGAGATTATCAAAGGCAGCTCAG
GTGTCAACCGTGAGGTGCGAGTGGGTGTAACGCATGCATACGTGGTTTTC
GTGCAATTCATGGGCAGCGTTTGGTTGGAACGACAGTTAAGCACATTTCT
GGCACACGTTTTGGATCTCGTGGCCAATCCAAAGGCAGCGTGCTCCCACG
TAGATGCAGTGTATTCACGGAAATGCATTAGCTTTATACTCCGATCAACG
ATTGGAAAGATGCTAGGCGAGAAGGCGCAGAGCGCTGCCTGCAAGGAACT
GGTCCATCTGGTAGCCAAACAGATGAACTCAATTGACTTCAATCCCGAGA
ACGCCAAGGATTCTAATCAAGAAACACTGTTCAGTCAGCACCTGCTGGTG
TGTGCCCTCCAGGAATTGAGTTCTCTACTTATTGGATTAGGAACCACGGC
CCAGAACTTGTTGGGAGATCAATCCCTGCAAGCGATCGATGCTACCTGTG
CCGTATTGGTACATCCCTGCGCCGCTGCCCGTTTGGCTGCCGCTTGGTGC
TTACGATGCGCTTGTGTGGCGGTTCCTGGGCAAATCACGCCACTAATTGA
TCGCTTTGTGGAGGCCATCGAGCAGATGCGATCCTCGCCAGAAGCAATGG
CCGGATATAGCTGCGCTTTGGCGGCAATTTTGGGAAGCGTTCGGTACTCG
CCATTGGGCATACCCCACACAAAGGGAAAGGTCGTGTTCAACTGTGCGGA
GGAACTGCTGCGATCTGCTTCCCAGAATAGCCGCATGTCGCTGCACCGTA
CCCAGGCCGGCTGGCTATTAATTGGAGCTATAATGACTTTGGGATCGCCG
GTAGTCAAGGGCTTGCTGCCGCGAATGCTGCTACTGTGGCGGAACTCTTT
CCCGCGGTCCAACAAAGAGCTTGAATCGGAAAAGGCGCGCGGCGATGCCT
TTACCTGGCAGGTGACCCTAGAGGGCAGAGCTGGAGCTCTTTCTGTAATG
CACAGCTTCCTGCTTAATTGCCCGGATCTCCTGAACGAAGACATAACCAG
ACGACTACTCACCCCCATCGAAAGCGCCCTGGCCATGTTGGTCAACTTGG
CATCTGTCCTAAAGAGCTATGGAACCCAGCTAAAGGCACCGGCAGCTATG
GTGCGGCTTCGTCTCTTTGAAACGCTGACGCTGCTGCCTGCTAATGCGCT
AGAGGCCTCCTATACCCATCTTCTTCGCATGCTCGTCTCGGAGTTTACTC
TTTCGGATAACGCGGCCAACACTACAAACTCATTGTTGCGGACGCTTTGT
CATGGTGATGATTCGATCATACTGGGCACCTGGCTGCAAGAAACTAATCA
TCGCACCATTGAGGATCAGCTGCAACCCAATAGCGCCGCGGGATCTGGCG
CCTTAGAGCACGATCCATGCTGTTTGTACCGTCCCAGGTCTGCCCAAGGC
AATGGATCCAGCTCGAATGGTTCATCAGCAACATCTACTGGTGGAAGCAA
CGGCGGTGGAGGAAGCAACATTCAGCAGATCAGCAAGGCCCAACAGTGTC
CAGGACCATTGCCACTCGGGGTAGCAGTGATCGATATGGCAGTGACTCTG
TATGGAACCATTTTTCCCAAAGTGGCAAACAAGCATAGGCTGCAAATGCT
GGAGCACTTTACTGAGTGCATTCGCCAGGCCAAGAGCAGTCGCCAAGAAG
CCGTTCAAATGAATATCTTTACGGCTCTGCTATGCGCTCTAAAAAATCTG
ACAGATAGCAAGACAAGCCTAGGACAGGAGGATGTTCGAAAGAGTGCCAC
GGCATTGATAGTTGCTTCGCTGACGAGTGCCAACTCTACCATACGGTGTG
CGGCTGGAGAGGCCTTGGGTCGATTGGCCCAGGTCGTGGGAGATTCTCAT
TTTACCGCGGAGTTGGCTCAAAATAGTTTTGATAAACTAAAGTCTGCCAG
AGATGTGGTCACGAGGACGGGACATTCACATGCCCTGGGCTGCCTGCATC
GCTATGTGGGTGGCATGGGCTCGTCGCAGCATCTGAGCACCAGTGTATCT
ATCCTTTTGGCCTTGGGTCAAGATAGTGCATCGCCAGTGGTACAGGCTTG
GTCGCTTTATGCTCTAGCGCAGATTGCCGACTCTGGAGGACCAATGTTCC
GCGGCTACGTGGAGGCAACTTTGACGCTGTGTCTGAAACTTTTACTTACC
GTACCCCACGCTCATGTTGATGTACATCAGTGTGTGGGCCGTGTAGTCAA
TGCGTTGATCACCACCGTGGGACCGGAGTTGCAAGGAGGAGGAGGCGCAG
TGGCCACCATGAGAGGATCATTCCTCTGCTCAGCAGCTCTTCTTCAATCA
CATTCGGATCCTCTTGTACAAGCTGAGGCTATTGGCTGCCTGCAGCAGCT
ACATCTTTTTGCCAGTAAATCTCTGCAACTAGAGGAGTTGGTACCCACGC
TGGTTGGAATGCTAGCCTGTAACTATTTCATACTTCGCAAGGCCTCCGTT
TCCTGCCTCCGTCAGTTGGCCCATCGAGAAGCTAAGGAAGTGTGTGAATT
AGCTTTAACTATTAACGCCGAACAACTTCCGGATTTGGTAATTACGGAGT
ATGGACTTCCAGGGCTGCTTTTCTCACTGCTCGACACAGAAACGGATGCC
GAGATGCTGAGAAACATTCACGATACACTCACATCAATGCTCCAAATGCT
GGCTGCAGATAATCTCAGCTCCTGGTTGAGTCTTTGCAAGAATGTGTTAA
CCGTTGCTGTGGAAGGAGGACTAAATGATGATCCCGCTGCTGGGGAACAA
AGCAAGAGCAAGGAGGCTGGTGGAGAAGATGATGAAGAGGACGAGGAGGA
AGAGTATGCTGATGATGTAACAGAATACCGAGCAGAGGAGAACACATCCA
CCCATCCAGCAGTGCAGCCAAGGTGGCCCACTCGTGTTTTCGCCGCCCAG
TGCGTGCGGCGGATCATAGCCAGCTGTGAGGCTGCCAGTTCAGTGCACTT
TGATCTCCTGCAGGCTAAGGAACAGCAACTTATTCGTTCTCGCGGAGATT
ACCTCATCCTCCATTTAGCGGAACTTATTCGAATGTCCTTTATGGCTGCC
ACCTCGGACTCGGATCAATTGAGATTAGAAGGATTGCGCACCCTGCAGGA
AATAATCGATCGATTTGCTAACGTTCCGGAACCGGAGTTCCCTGGTCACC
TACTCTTGGAGCAGTTCCAGGCTCAGGTGGGAGCTGCCTTGCGCCCTGCT
TTCGCGCCGGATACCCCCTCCCATGTGACAGCTGCTGCTTGTGAAGTTTG
CTCAGCGTGGATTGGATCTGGAGTGGCTCGCGACATAGGAGATCTAAAAA
GAGTTCACCAGCTGTTAGTCAGTTCCCTTGATAAGCTTTCCTCAAAAACC
AACAGCACTCAGTTATATAACGAATCCATGGCTACTTTGGAGAAGCTAAG
CATTTTAAAGGCGTGGGCAGAGGTTTATATTGTGGCCATGATAGGAAATG
GAAAGGCTCCGGCTTCCCTACTGAATCTCCAATCCCAACAATCCGGCTTT
CAATCCTTAACCAATCTGGAAACGGACTCGGATGTTCCTGACAGTAGGGG
TGAAAGTCTTTTAGGATTAGTGCAACCTGAGCTCCACAATCTTTCAACAC
ACTGGCTGAGTGCTATGAAGGATCACGCCTTGCTGCTTCTACCTGCGGAG
TTCCAATCCCAACTACCGCACGACGGAGGAGCCTTTTACACCACGGACAC
CATTAATTCGTCAAAACCACATTACATGACCAGTTGGCCCCCAATCCTCT
ATGCCTCCGCACTATGGTTAAGGGATGAAGGGTTCGCCCGTCATCTAGAC
ACAAGTGAAGCCGCAGCTGAGTCCAACAATAATCAGATCACTCATGGATC
TTTGTCAGCGGATCGCTTCCATATGATCTTCGGCATCTGCATGGAGGCGC
TCTGCAGCATGAGAAGCTCTGAAAGGCCGAGAAACATTGTGAGCTGCCTT
CGCTCACTGCACAGCATCTTTGATTCTGATTGGGCTAGGAGGCAGTTGGT
CAAGGATCGGGCTTTAACCATTGAACTCTGTCATGTTCTACATCGTCAGA
TACTGACGAGAGATGAATTACTCGTACAACTTCTGTGCGTAGAAATTTTA
AAGCAAACAATCCGCGCTGCTAGGGAAGACTTAGAAAGAAAACGGGACGA
TAATGCCAATTCTGAGGACGGAAAGGGTGGAGAGCGACATGGAGAAGATG
ATTCTATGCAGCCAGGAAGCTCGCATGTCTACGCCGTTCTGGAGGTTTGT
CTTTGCCTATTTGTTCGCCAAATACCTACGATGAATCCCACGAGGCAGGG
AGCTGGTGGCTCCGGCTTACAGCTGGACTTTGCCTATGCCAAAATGGCCA
CTGGCTCGTCATTCTTCTCGGTGCTCGGCGATGAAAACGGCCTGCTAGTA
TCCAGCGGACTGCAGTGCGTCGAACAGTTGATGGATTTGTGTACTCCCAA
AGGTGCCCTTGCAATCCTGCCCACCGTCCTGTATATGACAACCAGTATCG
TTAAAGAAATCGCCAACAAGTCGGCCATAGATAGTACTATCTTGGCAAAT
ACGTGTGCTGTGAAGTCTGCCCTGCAGTGCTTGCGATCCGTTTGTGTCCA
CAAGTGGGCTAAAGTAGAGGAGACAACCGAGGAATGGCAACAGTTACTGC
AAAGTGCACTGGCCACCATTGTGGATCTCACCAAAACGGCTGGCGATAAC
GAGGAAAGGAAAGTCGACGAGGTCACTATGCTGCTGGCCATCACTGTTTT
TATTCTACATACTCCCGCCTCCGTTGTGGCTACACCTTCATTGCAATATC
CATGCATTAATCACTTCCGGCAGTGCCTGCAGTCGGAGAACCTCTCGGTG
AAGCTGCGCTGCATCGAGACCACGCGATCGATCTTCGCTCGGGCCGAATT
GAAGACGGCAACACCCTACATCCACGCACTTGCGCCTAGGATAATCGAAT
CGTTGTATGCGGAGTCCAGCAAGGTGCCCACAAGCGAACTGGAGCTACAG
GTCACCCTGGAGAGCATCGTTACCGTGGAGCAGCTTATAGACTTGTCGGA
GCCGCAGAACCATATTCAGATGCTGACTCTGTTGGTCCCTGTGCTCATTG
GCTTCCTAGCGGAACCCAGTCGACTCCGGACGCTGCCAAAGTATCAACGG
CAGCTGCACGACCAGGCGCTGCAGTGGCTACTGAAGATCGGTCCGAAATA
TCCGCAGGAGTTTAAGGCCCTGATGGGTCAAACACCGGAACTGCGACAAA
AACTAGAAGCGGCCATTCGCAGCCAACAGCAGTCGATTAACATTGCCCAA
AAAGCAAGCGAGGCGCAGAGGAACCTGCTGGCCAAGCCGCAGAAGCCTAC
GATCAAGCTGAAGACGGATTTCAGTAACTTCCAATGAAAGCTTTCTAGAC
CAT
BS27930.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-RC | 6465 | CG2747-PC | 141..6465 | 13..6337 | 31610 | 100 | Plus |
| CG2747-RD | 6321 | CG2747-PD | 1..6321 | 17..6337 | 31605 | 100 | Plus |
| CG2747-RE | 6486 | CG2747-PE | 141..6486 | 13..6337 | 31365 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-RD | 7016 | CG2747-RD | 222..6546 | 13..6337 | 31610 | 100 | Plus |
| CG2747-RC | 7026 | CG2747-RC | 474..6798 | 13..6337 | 31610 | 100 | Plus |
| CG2747-RE | 7289 | CG2747-RE | 474..6819 | 13..6337 | 31365 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8018208..8021951 | 6011..2268 | 18720 | 100 | Minus |
| 3R | 32079331 | 3R | 8022953..8024593 | 1995..355 | 8205 | 100 | Minus |
| 3R | 32079331 | 3R | 8024653..8024994 | 354..13 | 1695 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8016680..8017005 | 6337..6012 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 8022618..8022891 | 2269..1996 | 1370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:07:19 has no hits.
BS27930.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 11:47:36 Download gff for
BS27930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 478..6797 | 17..6336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:40 Download gff for
BS27930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 478..6797 | 17..6336 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:40 Download gff for
BS27930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8016681..8017005 | 6012..6336 | 100 | <- | Minus |
| 3R | 8018208..8021949 | 2270..6011 | 100 | <- | Minus |
| 3R | 8022618..8022891 | 1996..2269 | 100 | <- | Minus |
| 3R | 8022953..8024593 | 355..1995 | 100 | <- | Minus |
| 3R | 8024653..8024990 | 17..354 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 11:47:36 Download gff for
BS27930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3842403..3842727 | 6012..6336 | 100 | <- | Minus |
| arm_3R | 3843930..3847671 | 2270..6011 | 100 | <- | Minus |
| arm_3R | 3848675..3850315 | 355..1995 | 100 | <- | Minus |
| arm_3R | 3850375..3850712 | 17..354 | 100 | | Minus |
| arm_3R | 3848340..3848613 | 1996..2269 | 100 | <- | Minus |
BS27930.pep Sequence
Translation from 16 to 6336
> BS27930.pep
MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQK
KLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILK
NKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLRNAES
QARIEIMHTLEKVSAGMGTAIANVHKDIYKAAKHCLLDRVMAVRVAAARC
ILKMIYSAPFLYQTELESLGTLCFRAFDGSNYEVRCAVAQLLGTLLAYTQ
QLAEAATSKKKQGQAVAIQAGKGATQRLVSLDEALGILMSGFLRGGASFL
KGTGEIIKGSSGVNREVRVGVTHAYVVFVQFMGSVWLERQLSTFLAHVLD
LVANPKAACSHVDAVYSRKCISFILRSTIGKMLGEKAQSAACKELVHLVA
KQMNSIDFNPENAKDSNQETLFSQHLLVCALQELSSLLIGLGTTAQNLLG
DQSLQAIDATCAVLVHPCAAARLAAAWCLRCACVAVPGQITPLIDRFVEA
IEQMRSSPEAMAGYSCALAAILGSVRYSPLGIPHTKGKVVFNCAEELLRS
ASQNSRMSLHRTQAGWLLIGAIMTLGSPVVKGLLPRMLLLWRNSFPRSNK
ELESEKARGDAFTWQVTLEGRAGALSVMHSFLLNCPDLLNEDITRRLLTP
IESALAMLVNLASVLKSYGTQLKAPAAMVRLRLFETLTLLPANALEASYT
HLLRMLVSEFTLSDNAANTTNSLLRTLCHGDDSIILGTWLQETNHRTIED
QLQPNSAAGSGALEHDPCCLYRPRSAQGNGSSSNGSSATSTGGSNGGGGS
NIQQISKAQQCPGPLPLGVAVIDMAVTLYGTIFPKVANKHRLQMLEHFTE
CIRQAKSSRQEAVQMNIFTALLCALKNLTDSKTSLGQEDVRKSATALIVA
SLTSANSTIRCAAGEALGRLAQVVGDSHFTAELAQNSFDKLKSARDVVTR
TGHSHALGCLHRYVGGMGSSQHLSTSVSILLALGQDSASPVVQAWSLYAL
AQIADSGGPMFRGYVEATLTLCLKLLLTVPHAHVDVHQCVGRVVNALITT
VGPELQGGGGAVATMRGSFLCSAALLQSHSDPLVQAEAIGCLQQLHLFAS
KSLQLEELVPTLVGMLACNYFILRKASVSCLRQLAHREAKEVCELALTIN
AEQLPDLVITEYGLPGLLFSLLDTETDAEMLRNIHDTLTSMLQMLAADNL
SSWLSLCKNVLTVAVEGGLNDDPAAGEQSKSKEAGGEDDEEDEEEEYADD
VTEYRAEENTSTHPAVQPRWPTRVFAAQCVRRIIASCEAASSVHFDLLQA
KEQQLIRSRGDYLILHLAELIRMSFMAATSDSDQLRLEGLRTLQEIIDRF
ANVPEPEFPGHLLLEQFQAQVGAALRPAFAPDTPSHVTAAACEVCSAWIG
SGVARDIGDLKRVHQLLVSSLDKLSSKTNSTQLYNESMATLEKLSILKAW
AEVYIVAMIGNGKAPASLLNLQSQQSGFQSLTNLETDSDVPDSRGESLLG
LVQPELHNLSTHWLSAMKDHALLLLPAEFQSQLPHDGGAFYTTDTINSSK
PHYMTSWPPILYASALWLRDEGFARHLDTSEAAAESNNNQITHGSLSADR
FHMIFGICMEALCSMRSSERPRNIVSCLRSLHSIFDSDWARRQLVKDRAL
TIELCHVLHRQILTRDELLVQLLCVEILKQTIRAAREDLERKRDDNANSE
DGKGGERHGEDDSMQPGSSHVYAVLEVCLCLFVRQIPTMNPTRQGAGGSG
LQLDFAYAKMATGSSFFSVLGDENGLLVSSGLQCVEQLMDLCTPKGALAI
LPTVLYMTTSIVKEIANKSAIDSTILANTCAVKSALQCLRSVCVHKWAKV
EETTEEWQQLLQSALATIVDLTKTAGDNEERKVDEVTMLLAITVFILHTP
ASVVATPSLQYPCINHFRQCLQSENLSVKLRCIETTRSIFARAELKTATP
YIHALAPRIIESLYAESSKVPTSELELQVTLESIVTVEQLIDLSEPQNHI
QMLTLLVPVLIGFLAEPSRLRTLPKYQRQLHDQALQWLLKIGPKYPQEFK
ALMGQTPELRQKLEAAIRSQQQSINIAQKASEAQRNLLAKPQKPTIKLKT
DFSNFQ*
BS27930.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-PD | 2106 | CG2747-PD | 1..2106 | 1..2106 | 10679 | 100 | Plus |
| CG2747-PC | 2154 | CG2747-PC | 49..2154 | 1..2106 | 10679 | 100 | Plus |
| CG2747-PA | 2165 | CG2747-PA | 49..2165 | 1..2106 | 10657 | 99.5 | Plus |
| CG2747-PB | 2117 | CG2747-PB | 1..2117 | 1..2106 | 10657 | 99.5 | Plus |
| CG2747-PE | 2161 | CG2747-PE | 49..2161 | 1..2106 | 10653 | 99.6 | Plus |
