BS27931.complete Sequence
1301 bp assembled on 2011-09-30
GenBank Submission: KX805004
> BS27931.complete
GAAGTTATCAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTG
CTCGCAAGCGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTT
GGCAATGATTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCT
CCCCAAGAAATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGC
GGAAAAATCCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCA
GAACATAAGGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCT
ATCACCGGTATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGC
AATCGGATGTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCC
AGACGCACACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGT
TTCACCGACTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCC
AAAAAAAGAGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATG
GAGGTCTCATTGCCAAGCATTCAGAACAATGAGCACATTAGCAGACGGTG
GACGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTATTGATC
TGGTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTAGACTCT
GAAGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGAAAATAT
TTTTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGCTTGGCG
AGATCCAGATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCATCTGTTC
AAGGAGTTAGCATCACGCAATGGGATAGATGAGAATGATATAACGGTGGA
TATGTACTATAACTTCGTTGGACCTGAGGATACGCCGCACAGCATTGGTC
TCAAATCATTTCATACGCTCACTGGCCATCCAACAAAGAGTCACAATAAT
AACAACGTGGCTGCTAAAATTGACTACAATCCAGAAGCTCTTTGCCGGAA
ACCTAAGAAGTTTCAAGTTAAAGTACAGGCGGATAAATGGAAGCATCCTT
TGGTGATACCCATGAAGAAAACTGATAATTTCAAAATCATATTTATTAAG
TGTGCTGAGGAGTTGAACTGTGATCCCCGAACCATTAAATTGTTTTTTGA
CGGTGACTTGTTGGATCCAAATGATACGCCCAATAACCAGGATATGGAGG
GCAACGAAGTTATAGATCTTAAAATAAAGGCTTAAAAGCTTTCTAGACCA
T
BS27931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4449-RC | 1269 | CG4449-PC | 1..1269 | 17..1285 | 6345 | 100 | Plus |
CG4449-RB | 1269 | CG4449-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
CG4449-RF | 1266 | CG4449-PF | 1..1266 | 17..1285 | 6265 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4449-RC | 1494 | CG4449-RC | 77..1346 | 17..1286 | 6350 | 100 | Plus |
CG4449-RB | 1671 | CG4449-RB | 254..1523 | 17..1286 | 6350 | 100 | Plus |
CG4449-RF | 1491 | CG4449-RF | 77..1343 | 17..1286 | 6270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23250606..23251104 | 571..73 | 2495 | 100 | Minus |
3R | 32079331 | 3R | 23249741..23249963 | 1194..972 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 23250023..23250202 | 971..792 | 900 | 100 | Minus |
3R | 32079331 | 3R | 23250425..23250540 | 687..572 | 580 | 100 | Minus |
3R | 32079331 | 3R | 23250256..23250363 | 793..686 | 540 | 100 | Minus |
3R | 32079331 | 3R | 23249591..23249682 | 1286..1195 | 460 | 100 | Minus |
3R | 32079331 | 3R | 23251167..23251224 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1417..1463 | 738..785 | 111 | 72.9 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 1309..1355 | 738..785 | 111 | 72.9 | Plus |
BS27931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:51 Download gff for
BS27931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4449-RB | 254..1520 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:39 Download gff for
BS27931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4449-RB | 254..1520 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:47 Download gff for
BS27931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4449-RB | 254..1520 | 17..1283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:47 Download gff for
BS27931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23250427..23250540 | 572..685 | 100 | <- | Minus |
3R | 23249594..23249682 | 1195..1283 | 100 | <- | Minus |
3R | 23249741..23249963 | 972..1194 | 100 | <- | Minus |
3R | 23250023..23250201 | 793..971 | 100 | <- | Minus |
3R | 23250257..23250363 | 686..792 | 100 | <- | Minus |
3R | 23250606..23251102 | 75..571 | 100 | <- | Minus |
3R | 23251167..23251224 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:39 Download gff for
BS27931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19076149..19076262 | 572..685 | 100 | <- | Minus |
arm_3R | 19075316..19075404 | 1195..1283 | 100 | <- | Minus |
arm_3R | 19075463..19075685 | 972..1194 | 100 | <- | Minus |
arm_3R | 19075745..19075923 | 793..971 | 100 | <- | Minus |
arm_3R | 19075979..19076085 | 686..792 | 100 | <- | Minus |
arm_3R | 19076328..19076824 | 75..571 | 100 | <- | Minus |
arm_3R | 19076889..19076946 | 17..74 | 100 | | Minus |
BS27931.pep Sequence
Translation from 16 to 1284
> BS27931.pep
MSDDDCDIFSAARKRIPEIALPKNPYNLGNDSFSKEVDYDFIEDLPKKST
KTGKRKNPAATRKNPPKSQDDASPPKQAEHKAVEPEEDMRTERSLSPVSL
LILEMEKKNGQQSDVEKHAKENDVGPVARRTRSSLNRSEMAPPPVSPTVE
VPTQTKPKKRGQKKRTSLTTTTSNSASMEVSLPSIQNNEHISRRWTLAEV
AARSKVVDSIDLVSAVAPRVEGFVNLDSEDEGEKEAPPVVEEENIFDNDN
PTIEVALSWLGEIQIYKLRQHQKFKHLFKELASRNGIDENDITVDMYYNF
VGPEDTPHSIGLKSFHTLTGHPTKSHNNNNVAAKIDYNPEALCRKPKKFQ
VKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCDPRTIKLFFDGDLLD
PNDTPNNQDMEGNEVIDLKIKA*
BS27931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4449-PC | 422 | CG4449-PC | 1..422 | 1..422 | 2208 | 100 | Plus |
CG4449-PB | 422 | CG4449-PB | 1..422 | 1..422 | 2208 | 100 | Plus |
CG4449-PD | 424 | CG4449-PD | 1..424 | 1..422 | 2195 | 99.5 | Plus |
CG4449-PA | 424 | CG4449-PA | 1..424 | 1..422 | 2195 | 99.5 | Plus |
CG4449-PF | 421 | CG4449-PF | 1..421 | 1..422 | 2191 | 99.8 | Plus |