Clone BS27931 Report

Search the DGRC for BS27931

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:279
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG4449-RB
Protein status:BS27931.pep: full length peptide match
Sequenced Size:1301

Clone Sequence Records

BS27931.complete Sequence

1301 bp assembled on 2011-09-30

GenBank Submission: KX805004

> BS27931.complete
GAAGTTATCAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTG
CTCGCAAGCGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTT
GGCAATGATTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCT
CCCCAAGAAATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGC
GGAAAAATCCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCA
GAACATAAGGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCT
ATCACCGGTATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGC
AATCGGATGTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCC
AGACGCACACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGT
TTCACCGACTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCC
AAAAAAAGAGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATG
GAGGTCTCATTGCCAAGCATTCAGAACAATGAGCACATTAGCAGACGGTG
GACGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTATTGATC
TGGTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTAGACTCT
GAAGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGAAAATAT
TTTTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGCTTGGCG
AGATCCAGATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCATCTGTTC
AAGGAGTTAGCATCACGCAATGGGATAGATGAGAATGATATAACGGTGGA
TATGTACTATAACTTCGTTGGACCTGAGGATACGCCGCACAGCATTGGTC
TCAAATCATTTCATACGCTCACTGGCCATCCAACAAAGAGTCACAATAAT
AACAACGTGGCTGCTAAAATTGACTACAATCCAGAAGCTCTTTGCCGGAA
ACCTAAGAAGTTTCAAGTTAAAGTACAGGCGGATAAATGGAAGCATCCTT
TGGTGATACCCATGAAGAAAACTGATAATTTCAAAATCATATTTATTAAG
TGTGCTGAGGAGTTGAACTGTGATCCCCGAACCATTAAATTGTTTTTTGA
CGGTGACTTGTTGGATCCAAATGATACGCCCAATAACCAGGATATGGAGG
GCAACGAAGTTATAGATCTTAAAATAAAGGCTTAAAAGCTTTCTAGACCA
T

BS27931.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-RC 1269 CG4449-PC 1..1269 17..1285 6345 100 Plus
CG4449-RB 1269 CG4449-PB 1..1269 17..1285 6345 100 Plus
CG4449-RF 1266 CG4449-PF 1..1266 17..1285 6265 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-RC 1494 CG4449-RC 77..1346 17..1286 6350 100 Plus
CG4449-RB 1671 CG4449-RB 254..1523 17..1286 6350 100 Plus
CG4449-RF 1491 CG4449-RF 77..1343 17..1286 6270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23250606..23251104 571..73 2495 100 Minus
3R 32079331 3R 23249741..23249963 1194..972 1115 100 Minus
3R 32079331 3R 23250023..23250202 971..792 900 100 Minus
3R 32079331 3R 23250425..23250540 687..572 580 100 Minus
3R 32079331 3R 23250256..23250363 793..686 540 100 Minus
3R 32079331 3R 23249591..23249682 1286..1195 460 100 Minus
3R 32079331 3R 23251167..23251224 74..17 290 100 Minus
Blast to na_te.dros performed 2014-11-27 10:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 1417..1463 738..785 111 72.9 Plus
Stalker 7256 Stalker STALKER 7256bp 1309..1355 738..785 111 72.9 Plus

BS27931.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:51 Download gff for BS27931.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 254..1520 17..1283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:39 Download gff for BS27931.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 254..1520 17..1283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:47 Download gff for BS27931.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 254..1520 17..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:47 Download gff for BS27931.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23250427..23250540 572..685 100 <- Minus
3R 23249594..23249682 1195..1283 100 <- Minus
3R 23249741..23249963 972..1194 100 <- Minus
3R 23250023..23250201 793..971 100 <- Minus
3R 23250257..23250363 686..792 100 <- Minus
3R 23250606..23251102 75..571 100 <- Minus
3R 23251167..23251224 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:39 Download gff for BS27931.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19076149..19076262 572..685 100 <- Minus
arm_3R 19075316..19075404 1195..1283 100 <- Minus
arm_3R 19075463..19075685 972..1194 100 <- Minus
arm_3R 19075745..19075923 793..971 100 <- Minus
arm_3R 19075979..19076085 686..792 100 <- Minus
arm_3R 19076328..19076824 75..571 100 <- Minus
arm_3R 19076889..19076946 17..74 100   Minus

BS27931.pep Sequence

Translation from 16 to 1284

> BS27931.pep
MSDDDCDIFSAARKRIPEIALPKNPYNLGNDSFSKEVDYDFIEDLPKKST
KTGKRKNPAATRKNPPKSQDDASPPKQAEHKAVEPEEDMRTERSLSPVSL
LILEMEKKNGQQSDVEKHAKENDVGPVARRTRSSLNRSEMAPPPVSPTVE
VPTQTKPKKRGQKKRTSLTTTTSNSASMEVSLPSIQNNEHISRRWTLAEV
AARSKVVDSIDLVSAVAPRVEGFVNLDSEDEGEKEAPPVVEEENIFDNDN
PTIEVALSWLGEIQIYKLRQHQKFKHLFKELASRNGIDENDITVDMYYNF
VGPEDTPHSIGLKSFHTLTGHPTKSHNNNNVAAKIDYNPEALCRKPKKFQ
VKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCDPRTIKLFFDGDLLD
PNDTPNNQDMEGNEVIDLKIKA*

BS27931.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-PC 422 CG4449-PC 1..422 1..422 2208 100 Plus
CG4449-PB 422 CG4449-PB 1..422 1..422 2208 100 Plus
CG4449-PD 424 CG4449-PD 1..424 1..422 2195 99.5 Plus
CG4449-PA 424 CG4449-PA 1..424 1..422 2195 99.5 Plus
CG4449-PF 421 CG4449-PF 1..421 1..422 2191 99.8 Plus