BS27936.complete Sequence
1013 bp assembled on 2011-09-30
GenBank Submission: KX801111
> BS27936.complete
GAAGTTATCAGTCGACATGGAAAATTCTGCGCGAATCGTATATGTGTGCA
GTCTCTGCCTTCGTCAATATGATCTCCAGGAGGATCTTCGAGGACATCTC
GTCTACTTTCACGGCTATGAGCCCATCTCAACGCCCAGTGTCAAAAACAA
AACTGCGAAGACTTCAACTAAGGAACAAACTGCAGCCGGCAGCAACAGCC
AGGATAAGCAAACCGTTGTGGAGCGATCGGAGAACTCGGAACCCCCGGCA
AGTGAACTGCAGCCCATGCCTTTCAAGGACTTTCGGCTGGTGCTAAGGGC
CAACATGTTAGAGCCGTGCTCCTTTGGAAAGGAATGCCCCTTCAAGTTCC
AAGATGCTACCAAAATGGAGCTCCACTGTAGTTGCCATAAGGGTGGCAGT
TTTTCCTGCTGCGAATGTGGCATGGAACTGCCCAACTGGCGGCGGTGCTC
GGCTCACCTGTGGAAAGCCCACCAGGTGGATGTGGACCTACTAGTGTGTC
CCGTTTTCGAATGCAACTACAAGTCGCCCATATCCGCTCTCGTGTGGCGC
CACATGCAGGTTCACAAAAAGTGGCGACCCAGGGTGCTCCGGTCACTGGC
TGCCGTTCAGCGGAGAAGAAAGCTCAAGGAACAGTCCGCAGAGATGGCCG
CGCAACCTGCTGCTCTGCCACCATCGTCAAAGAAAAACAAATACTATGCC
GAGAAGACTTGCGAGATTTGCAATCGCAAGTTTGTCAACGGTAAAACGCT
CTCTAAACACGTGAAGACTGTTCACAACAAAATCAAGCCATTTATCTGCA
ATGTGTGTGGCAAAAAGACGGCTCGCAAGGCTAGCTTAATAGTGAGTTCA
GATAGCACTTTACGATCTTCTTGCTACCTAATACTCTTTCCAGATTCACA
TGCGTCAGCACACGGGCGAGAAGCCGCTGCAATGTGGCGAATGCAAGTTC
TCCACTCGCGATCCCAGTGTCCTGCACAAGCATCGGCAGCGTCATGAAAG
CTTTCTAGACCAT
BS27936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11456-RB | 981 | CG11456-PB | 1..981 | 17..997 | 4905 | 100 | Plus |
| CG11456-RC | 1338 | CG11456-PC | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG11456-RA | 1338 | CG11456-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG11456-RC | 1338 | CG11456-PC | 826..933 | 894..1001 | 525 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11456-RB | 1806 | CG11456-RB | 65..1049 | 17..1001 | 4910 | 99.9 | Plus |
| CG11456-RC | 1433 | CG11456-RC | 65..889 | 17..841 | 4125 | 100 | Plus |
| CG11456-RA | 1754 | CG11456-RA | 65..889 | 17..841 | 4125 | 100 | Plus |
| CG11456-RC | 1433 | CG11456-RC | 890..997 | 894..1001 | 525 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20842403..20843088 | 316..1001 | 3415 | 99.9 | Plus |
| 3L | 28110227 | 3L | 20842051..20842351 | 17..317 | 1505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:43:17 has no hits.
BS27936.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:49 Download gff for
BS27936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 51..1030 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:39:12 Download gff for
BS27936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 65..1044 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:08 Download gff for
BS27936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 65..1044 | 17..996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:08 Download gff for
BS27936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20842051..20842349 | 17..315 | 100 | -> | Plus |
| 3L | 20842403..20843083 | 316..996 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:39:12 Download gff for
BS27936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20835151..20835449 | 17..315 | 100 | -> | Plus |
| arm_3L | 20835503..20836183 | 316..996 | 100 | | Plus |
BS27936.pep Sequence
Translation from 16 to 996
> BS27936.pep
MENSARIVYVCSLCLRQYDLQEDLRGHLVYFHGYEPISTPSVKNKTAKTS
TKEQTAAGSNSQDKQTVVERSENSEPPASELQPMPFKDFRLVLRANMLEP
CSFGKECPFKFQDATKMELHCSCHKGGSFSCCECGMELPNWRRCSAHLWK
AHQVDVDLLVCPVFECNYKSPISALVWRHMQVHKKWRPRVLRSLAAVQRR
RKLKEQSAEMAAQPAALPPSSKKNKYYAEKTCEICNRKFVNGKTLSKHVK
TVHNKIKPFICNVCGKKTARKASLIVSSDSTLRSSCYLILFPDSHASAHG
REAAAMWRMQVLHSRSQCPAQASAAS*
BS27936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11456-PB | 326 | CG11456-PB | 1..326 | 1..326 | 1748 | 100 | Plus |
| CG11456-PC | 445 | CG11456-PC | 1..276 | 1..276 | 1490 | 99.6 | Plus |
| CG11456-PA | 445 | CG11456-PA | 1..276 | 1..276 | 1490 | 99.6 | Plus |
