BS27938.complete Sequence
1127 bp assembled on 2011-09-30
GenBank Submission: KX804175
> BS27938.complete
GAAGTTATCAGTCGACATGTTGAACTCCCTTCCTTGCTCACTTCTTGATC
ACCCCAAGCTAAAATACGTGTTCCTAAAGCGGGTTAAGCCAAAGAAGCAC
CATGAAATCATTCGAATGGCCGAAATCTGTGCCCTGAGTCAACAAAAAAC
TCCTGTGGACTTTATTGTCGACTTTGGGGCTGGTGTCGGTCACCTAGCAC
GTGTTTTGGGCTACGGGTATGGACTACGAGTGTGCTGCTATGAGATGCAA
CCCGATCTCAATCAGCAAGCAAGGGAAATTGATTTAAAGCTGGAGTCCAT
GGCAGCAAAACACCTATCAGAGGATGAAACCACACACTTTCAGCGACCAG
TACACCTTACACATCGCTTGGAGAGCAGCACTAAGCCAGAGCAGTTCCTA
TCCAGCATTCGGCAGGCCCTGCAGCTAACAGACGACAATTTCCGATTTGG
TGTGATAGGCCTGCATCCCTGTGGCAATCTGGGCCCGACACTGATGCGCA
TGTTTCTCGGCTGCCCGCAGGCCAAGTTCCTCAATTTTGTGGGCTGTTGC
TACCAGAAGATGACTACCCAGTCCACCCATCCCAGGGAGCATGTCCATGG
GTACCCGTTGAGCAGTGAACTCAAAGATAAAAACGAATGCCAACTCAGCT
ACGAGGCCCGTGAGATCTCCTGTCACGCTATGGAGGTGTATCACGATCGT
CTGAGGATGGGGGATTACCAACATCTCCGCATACACTCCCTAAGAGCCGC
CGCCGAGCGAATAATAGTGCATCAGTTTCCAGAGCTTCGCCACTGTGCCC
TGCGAAATGTAAAGTACTCACCCGGCATGACGTTTCACCAATATTTCCAG
AAAGCCGTACAGGGTACTCGCTTTGAAGCACTGGACAGCCGAACTCTAAG
TAACCAGCAGACGGAAACAGATTTGGCCAACTGGCAACGGATAGTCTCAT
TCTACACACTTCGATTAATGATGGCTCCGCTGGTGGAGAGCATTATTCTT
TACGATCGCTGCCTGTTTCTAATGGAAAATGATTGTCAAGTACAGATAGA
GGCCATATTCGATCCTCGGCTCTCGCCTAGAAACCACATCACCAGGGCCG
TTAAACCGTAAAAGCTTTCTAGACCAT
BS27938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2906-RE | 1095 | CG2906-PE | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG2906-RD | 1371 | CG2906-PD | 283..1371 | 23..1111 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2906-RE | 1591 | CG2906-RE | 340..1434 | 17..1111 | 5475 | 100 | Plus |
| CG2906-RD | 1587 | CG2906-RD | 342..1430 | 23..1111 | 5445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7956897..7957715 | 22..840 | 4095 | 100 | Plus |
| 2R | 25286936 | 2R | 7957769..7957959 | 841..1031 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 7958017..7958097 | 1031..1111 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:46:38 has no hits.
BS27938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:54 Download gff for
BS27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 345..1432 | 22..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:01 Download gff for
BS27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 345..1432 | 22..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:34 Download gff for
BS27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 345..1432 | 22..1109 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:34 Download gff for
BS27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7956897..7957715 | 22..840 | 100 | -> | Plus |
| 2R | 7957769..7957959 | 841..1031 | 100 | -> | Plus |
| 2R | 7958018..7958095 | 1032..1109 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:01 Download gff for
BS27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3844402..3845220 | 22..840 | 100 | -> | Plus |
| arm_2R | 3845274..3845464 | 841..1031 | 100 | -> | Plus |
| arm_2R | 3845523..3845600 | 1032..1109 | 100 | | Plus |
BS27938.pep Sequence
Translation from 16 to 1110
> BS27938.pep
MLNSLPCSLLDHPKLKYVFLKRVKPKKHHEIIRMAEICALSQQKTPVDFI
VDFGAGVGHLARVLGYGYGLRVCCYEMQPDLNQQAREIDLKLESMAAKHL
SEDETTHFQRPVHLTHRLESSTKPEQFLSSIRQALQLTDDNFRFGVIGLH
PCGNLGPTLMRMFLGCPQAKFLNFVGCCYQKMTTQSTHPREHVHGYPLSS
ELKDKNECQLSYEAREISCHAMEVYHDRLRMGDYQHLRIHSLRAAAERII
VHQFPELRHCALRNVKYSPGMTFHQYFQKAVQGTRFEALDSRTLSNQQTE
TDLANWQRIVSFYTLRLMMAPLVESIILYDRCLFLMENDCQVQIEAIFDP
RLSPRNHITRAVKP*
BS27938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2906-PE | 364 | CG2906-PE | 1..364 | 1..364 | 1940 | 100 | Plus |
| CG2906-PD | 456 | CG2906-PD | 95..456 | 3..364 | 1931 | 100 | Plus |
| CG33964-PA | 494 | CG33964-PA | 122..489 | 26..363 | 212 | 25.9 | Plus |
