BS27939.complete Sequence
1079 bp assembled on 2011-09-30
GenBank Submission: KX805983
> BS27939.complete
GAAGTTATCAGTCGACATGCTGCCGCCGATGGCTTTTGCCTTACCCACAC
GTCGTGTTCCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCAC
AAGCCGGCCAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGG
CTTGGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGGAAACGACTTCCTTT
CGCACATCAGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAG
GATCCGGATGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCT
GGAGATCATCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCA
AGAACTTGGACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAG
CTCAAGCCCGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGA
TCAGAAGCGTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGG
CCTTGAACAAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTG
AACCTTTCGGACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAA
GATCAAGGAATGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCT
TCTCCGGCGCCTTCGAGCACCAGCTGACCGAAAAGGACGAACTGGAGCGC
AAGGCCTACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGT
TGTGACCGGCTACAAGGGCCTGCAGCTGGAGTACTTCTTCACCGCCGGGC
CGGATGAAGTGAAGGCATGGACCATCCAGAAGGGCACCAAGGCTCCCCAA
GCCGCCGGACGCATTCACACCGACTTCGAGAAGGGCTTCATTATGGCCGA
GGTGATGCACTTCGAGGACTTCAAGGCGGAGGGCAGTGAGGCGAATGCCA
AGGCCGCTGGCAAATATCGCCAACAGGGACGCAACTACACCGTCGAGGAT
GGCGACATCATATTCTTTAAGTTCAACGCCGGCGCTGGCCTCAAGGATGC
CAAGAAGAAATGAAAGCTTTCTAGACCAT
BS27939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RB | 1047 | CG1354-PB | 1..1047 | 17..1063 | 5145 | 99.4 | Plus |
| CG1354-RE | 1194 | CG1354-PE | 182..1194 | 51..1063 | 4975 | 99.4 | Plus |
| CG1354-RA | 1194 | CG1354-PA | 182..1194 | 51..1063 | 4975 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RB | 1257 | CG1354-RB | 21..1067 | 17..1063 | 5145 | 99.4 | Plus |
| CG1354-RE | 1491 | CG1354-RE | 286..1298 | 51..1063 | 4975 | 99.4 | Plus |
| CG1354-RA | 1498 | CG1354-RA | 296..1308 | 51..1063 | 4975 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9781159..9781728 | 494..1063 | 2790 | 99.3 | Plus |
| X | 23542271 | X | 9780509..9780892 | 110..493 | 1890 | 99.5 | Plus |
| X | 23542271 | X | 9780207..9780301 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:47:46 has no hits.
BS27939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:54 Download gff for
BS27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RB | 21..1066 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:12 Download gff for
BS27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RB | 21..1066 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:02 Download gff for
BS27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RB | 21..1066 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:02 Download gff for
BS27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9780511..9780892 | 112..493 | 99 | -> | Plus |
| X | 9780207..9780301 | 17..111 | 100 | -> | Plus |
| X | 9781159..9781727 | 494..1062 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:12 Download gff for
BS27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9674240..9674334 | 17..111 | 100 | -> | Plus |
| arm_X | 9674544..9674925 | 112..493 | 99 | -> | Plus |
| arm_X | 9675192..9675760 | 494..1062 | 99 | | Plus |
BS27939.pep Sequence
Translation from 16 to 1062
> BS27939.pep
MLPPMAFALPTRRVPVPDERFDYLVEYHKPASVVPAYLNVVDIAGLVKGA
AEGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRDLEIISE
ELRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILIDQKRHL
RFEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLPKIKEWI
DKNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYK
GLQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFE
DFKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKKK*
BS27939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-PB | 348 | CG1354-PB | 1..348 | 1..348 | 1824 | 100 | Plus |
| CG1354-PE | 397 | CG1354-PE | 62..397 | 13..348 | 1761 | 100 | Plus |
| CG1354-PA | 397 | CG1354-PA | 62..397 | 13..348 | 1761 | 100 | Plus |
| CG1354-PD | 397 | CG1354-PD | 62..397 | 13..348 | 1761 | 100 | Plus |
| CG1354-PC | 397 | CG1354-PC | 62..397 | 13..348 | 1761 | 100 | Plus |
