BS27944.complete Sequence
1643 bp assembled on 2013-09-16
GenBank Submission: KX804784
> BS27944.complete
GAAGTTATCAGTCGACATGGCGGCTCGCCTGGAAATCACCGTTAGCTTGG
CGCTCGCTGCAACGCTACTGTGCAGCATATTGGGTCATTGCGAAATGTCC
GTTTACCCAGGATTGCGCCGCCGACCCATTCAGCCGCCTGTGATGGATCC
GCAGAGTGAGCAAGAGTATGCTTTTCTGGCCCAGATGATGGAGCAGTATG
CCCGCCGTCGGCTGCAGCAGCAGTTCGACCAACAGCTGCACGAAATCAAC
CTGAAGATGGATCGTCAGCGGCAGCTCTTGGAGCAGGAGCGGTACCGCCA
GCGGCAGCAGGAGCTCCAGGTACAGCGCGAGGCGGAGGAGGACTACGAGT
CCAACGGAAACAACCTGAACCAGCAGTACGACCAGTACGACAACGCGGAG
GCAGAGGCCAGCTACGGCAGTCCGATGGAGGCAGTCTCTGATCTCCAAAG
TCCTCCATTGTACCTGCCTCGCCTGCCCAACCTACCACCCTTGCCCAGCC
TTCCGAATCGGCCCAGCCTGGGCAACTCCCCGAACAGGAACAGTGTGCTC
CGCGAACGGATTCCCTTTGCTGTAGGTCCCAGCGACGCTCGCTTCTTTGA
CAACCCGAACGACCCTTCGGGGGAGCTGGATTCCCGGGCGCTGGAGGACT
ACGAGGAGTATGCTCCCATTGAGCCCACAACCGAAGTAGCCACCACCGCC
AGTAAGACCAAGATCGATACGCCAGTACCGGCTCCCGTGCCCGTTGAGCC
GCCCAAACTGCTTGACGCCGCCAACACCAACTTCCACCGCATCAATCCCC
AGTCCGCCGCCGCCGCAGCCGTGGCGGGAGTGAATATTCCCCAGAGCAAA
GAACAACCACCCCATGAACTTAACGCACTGATCAACAAGCTGCAAAAGCA
AAGCAAAGCGCCCTCTCATTTGACGCTGGTCAACGGAGGTGATTCCAGTC
AGGAGCAGATTGTGCTGCGCCAGCACCTGGGCATGAACAGCGAGATGGGG
GTGTACATAGTGGCCCTAATAGCGGGGGTTAGTGCAGCGGTGACCGTTGG
GCTTCTTGCCCTCGGAGTAACTTGGTTCCATAATCGACACAAGGCAGCAG
CGGACGTGGAATACCCTGCCTACGGCGTTACCGGGCCGAACAAGGATGTC
TCGCCGTCCGGTGACAGAAAGCTGGCCCAGAGCGCCCAAATGTACCACTA
CCAGCACCAGAAGCAGCAGATCATCGCCATGGAGAACCAGGCCACGGATG
GTAGCTGCGGCATGTCGGACGTGGAGAGCGACGACGACAACGAGGAGGGC
GACTACACGGTGTACGAGTGCCCCGGCCTGGCGCCCACTGGTGAGATGGA
GGTGAAGAATCCGCTCTTCCTGGACGAGACGCCGGCCACGCCGTCAAACA
ACCTGTCGTCCCAAACCGCTGGAGCTGCCAATGCGGCAGCAGCGACCAAT
AACAACATCACGCAGGCTACCCCCCAGCAGCCGGCCACCCTGAAGAAGGG
AACGGTCAAGCCGAACATAAATCTCCTGAACGCAACGGGCACTGCAGCAG
CAGCAGCTTCAGCCGCATCAGCAGCCTCAGCGACCGGAGGGGAGGAGCCC
AAGCAGAAGCGCAAGAGCAAGAAGTAAAAGCTTTCTAGACCAT
BS27944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44247-RB | 1611 | CG44247-PB | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| CG44247-RA | 1611 | CG44247-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44247-RB | 3629 | CG44247-RB | 514..2124 | 17..1627 | 8055 | 100 | Plus |
| CG44247-RA | 2696 | CG44247-RA | 514..2124 | 17..1627 | 8055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24878136..24879104 | 108..1076 | 4845 | 100 | Plus |
| 2R | 25286936 | 2R | 24879163..24879716 | 1074..1627 | 2770 | 100 | Plus |
| 2R | 25286936 | 2R | 24877204..24877298 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1046..1119 | 1187..1262 | 130 | 70.1 | Plus |
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 639..744 | 717..822 | 124 | 61.1 | Plus |
BS27944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:53 Download gff for
BS27944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44247-RA | 514..2122 | 17..1625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:09 Download gff for
BS27944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44247-RA | 514..2122 | 17..1625 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:09 Download gff for
BS27944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24877204..24877297 | 17..110 | 100 | -> | Plus |
| 2R | 24878139..24879102 | 111..1074 | 100 | -> | Plus |
| 2R | 24879164..24879714 | 1075..1625 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:53 Download gff for
BS27944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20764727..20764820 | 17..110 | 100 | -> | Plus |
| arm_2R | 20765662..20766625 | 111..1074 | 100 | -> | Plus |
| arm_2R | 20766687..20767237 | 1075..1625 | 100 | | Plus |
BS27944.pep Sequence
Translation from 16 to 1626
> BS27944.pep
MAARLEITVSLALAATLLCSILGHCEMSVYPGLRRRPIQPPVMDPQSEQE
YAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQLLEQERYRQRQQEL
QVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSPMEAVSDLQSPPLYL
PRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAVGPSDARFFDNPNDP
SGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTPVPAPVPVEPPKLLD
AANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELNALINKLQKQSKAPS
HLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIAGVSAAVTVGLLALG
VTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKLAQSAQMYHYQHQKQ
QIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECPGLAPTGEMEVKNPL
FLDETPATPSNNLSSQTAGAANAAAATNNNITQATPQQPATLKKGTVKPN
INLLNATGTAAAAASAASAASATGGEEPKQKRKSKK*
BS27944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44247-PB | 536 | CG44247-PB | 1..536 | 1..536 | 2759 | 100 | Plus |
| CG44247-PA | 536 | CG44247-PA | 1..536 | 1..536 | 2759 | 100 | Plus |
