BS27945.complete Sequence
1406 bp assembled on 2011-09-30
GenBank Submission: KX804138
> BS27945.complete
GAAGTTATCAGTCGACATGAGGGAAATTGTGCATCTGCAGGCGGGCCAGT
GCGGCAATCAGATCGGTTCGAAGTTCTGGGAAATCATCTCCGACGAGCAC
GGCATCGATCCCAATGGTTACTACCACGGCGAGTCCGCCCTGCAGCACGA
GCGGATCGATGTTTACTACAACGAGGCCAGCAGCGGGAAGTACGTGCCGC
GAGCGGTGCTCATCGACCTGGAGCCGGGCACCATGGACTCCGTCCGCCAG
TCGCCGGTGGGCCAGCTTTTCCGGCCAGATAACTTCGTTTACGGACAGTC
GGGAGCCGGCAACAACTGGGCCAAGGGCCATTACACAGAGGGCGCCGAGC
TGATCGATTCCGTGCTGGAGGTGCTGCGCAAGGAATCCGAGGGCTGCGAC
TGCCTGCAGGGCTTCCAGCTGGCTCACTCGCTTGGCGGAGGCACTGGCTC
CGGCCTGGGCACGCTGCTCATCTCGAAGATTCGCGAGGAGTACCCCGACC
GCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTATCCGACACT
GTCGTGGAGCCGTACAATGCCACGCTGTCCATCCACCAGCTGGTGGAGAA
CACCGACGAGACATTCTGCATTGACAACGAGGCTCTCTACGACATCTGCT
TCCGCACGCTGAAGCTATCGTCGCCCACCTACGGCGATCTGAACCATCTC
GTCTCCGTCACAATGTCCGGAGTGACCACCTGCCTGCGCTTCCCTGGCCA
GCTGAACGCTGATCTTCGCAAGCTGGCGGTGAACATGGTGCCCTTCCCGC
GTCTGCACTTCTTCATGCCCGGATTCGCTCCGCTGACCGCCAAGGGATCC
CAGCAATATCGCGCCCTCACGGTGGCCGAGCTGACCCAGCAAATGTTCGA
TGCCAAAAACATGATGACCGCCTGTGATCCCCGGCACGGACGCTACCTCA
CCGTGGCCTGCATCTTCCGGGGACCCATGTCCATGAAGGAGGTGGACACG
CAGATGTACAACGTGCAGAGCAAGAACAGCAGCTACTTTGTCGAATGGAT
TCCCAACAACGTCAAGGTGGCCGTCTGCGACATCCCGCCCCGTGGGCTCA
AGATGTCCGCCACCTTCATTGGCAACTCGACCGCCATCCAGGAGATCTTT
AAGCGCATCTCCGAGCAGTTCACTGCCATGTTCCGGCGCAAGGCCTTCTT
GCACTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCG
AGAGCAACATGAACGATCTGATATCCGAGTACCAACAGTACCAGGAGGCT
ACCGCCGACGACGAAGTGGAGTTCGATGACGAGCAGGCCGAGCAGGAAGG
CTACGAGTCGGAGGTCCTGCAGAACGGCAATGGCGAGTAAAAGCTTTCTA
GACCAT
BS27945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub97EF-RB | 1374 | CG4869-PB | 1..1374 | 17..1390 | 6870 | 100 | Plus |
| betaTub97EF-RC | 1374 | CG4869-PC | 1..1374 | 17..1390 | 6165 | 96.6 | Plus |
| betaTub56D-RB | 1344 | CG9277-PB | 1..1321 | 17..1337 | 3425 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub97EF-RB | 1701 | CG4869-RB | 226..1604 | 13..1391 | 6880 | 99.9 | Plus |
| betaTub97EF-RC | 1701 | CG4869-RC | 226..1604 | 13..1391 | 6175 | 96.5 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 112..1432 | 17..1337 | 3425 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19447483..19448748 | 1337..72 | 3345 | 84.3 | Minus |
| 2R | 25286936 | 2R | 24311192..24312098 | 408..1314 | 2570 | 85.6 | Plus |
| 3R | 32079331 | 3R | 9408681..9409603 | 1329..407 | 2395 | 84 | Minus |
| 3R | 32079331 | 3R | 27967268..27967592 | 1295..971 | 1625 | 100 | Minus |
| 3R | 32079331 | 3R | 27968926..27969191 | 972..707 | 1330 | 100 | Minus |
| 3R | 32079331 | 3R | 27974107..27974344 | 309..72 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 27972918..27973151 | 541..308 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 27969658..27969829 | 708..537 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 27967105..27967203 | 1391..1293 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 24310997..24311138 | 269..410 | 395 | 85.2 | Plus |
| 3R | 32079331 | 3R | 27988099..27988159 | 73..13 | 290 | 98.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969535 | 650..554 | 215 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:47:54 has no hits.
BS27945.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:56 Download gff for
BS27945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 213..1584 | 17..1388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:16 Download gff for
BS27945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 230..1601 | 17..1388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:06 Download gff for
BS27945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 230..1601 | 17..1388 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 11:31:06 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 10:42:16 has no hits.
BS27945.pep Sequence
Translation from 16 to 1389
> BS27945.pep
MREIVHLQAGQCGNQIGSKFWEIISDEHGIDPNGYYHGESALQHERIDVY
YNEASSGKYVPRAVLIDLEPGTMDSVRQSPVGQLFRPDNFVYGQSGAGNN
WAKGHYTEGAELIDSVLEVLRKESEGCDCLQGFQLAHSLGGGTGSGLGTL
LISKIREEYPDRIMNSFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETF
CIDNEALYDICFRTLKLSSPTYGDLNHLVSVTMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTAKGSQQYRALTVAELTQQMFDAKNMM
TACDPRHGRYLTVACIFRGPMSMKEVDTQMYNVQSKNSSYFVEWIPNNVK
VAVCDIPPRGLKMSATFIGNSTAIQEIFKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLISEYQQYQEATADDEVEFDDEQAEQEGYESEV
LQNGNGE*
BS27945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub97EF-PB | 457 | CG4869-PB | 1..457 | 1..457 | 2415 | 100 | Plus |
| betaTub97EF-PC | 457 | CG4869-PC | 1..457 | 1..457 | 2362 | 97.2 | Plus |
| betaTub56D-PB | 447 | CG9277-PB | 1..447 | 1..453 | 2132 | 87.4 | Plus |
| betaTub85D-PA | 446 | CG9359-PA | 1..440 | 1..440 | 2094 | 87.5 | Plus |
| betaTub60D-PB | 453 | CG3401-PB | 1..450 | 1..445 | 2066 | 85.8 | Plus |
