BS27948.complete Sequence
1148 bp assembled on 2012-04-25
GenBank Submission: KX806477
> BS27948.complete
GAAGTTATCAGTCGACATGCGCCCGCCGCAGCAACTGCTCGTGTTGCTGC
TTGCAACAGTGGCCGCAGCTGGCCACAGCAGCTACAATTCGGTTTACAAC
GAGGTGATCCCGCCGAAGCTGAAGCAGGCCATCGACCAGGAGCTGCCCAA
GGAGGCCAAGTTCTTCGATGAGCTGGACTTGATACCGCAGTCGTGCCGCT
TTCGTGGCCACAAGTTCGAGTGCGGCCTGTCCATCTCCTGTGTCTTGGGC
GGCGGCAAGCCGCTGGATCTTTGCTCTGGCGGCATGATCTGGTCTTGTTG
CGTGGACAAAGATCTCGACGCCGAGGAGAGTCCGCACGCCGCCCCGGTGA
ACAACACGAGCTGCGGCGAGGTCTACACCCGATCCAATCGCATTGTAGGA
GGACATTCCACGGGCTTTGGCTCTCATCCCTGGCAGGTGGCGCTGATCAA
AAGTGGGTTCCTCACTAGGAAACTCAGCTGCGGCGGTGCACTGATCTCCA
ATCGATGGGTGATAACGGCTGCCCATTGTGTGGCTTCCACTCCAAACTCC
AATATGAAAATCCGATTGGGCGAGTGGGATGTTCGTGGTCAGGAGGAGCG
CCTAAACCACGAAGAGTATGGCATCGAGCGAAAGGAAGTGCATCCCCATT
ACAATCCGGCAGACTTTGTAAATGACGTGGCTCTGATCCGCTTGGACAGG
AATGTGGTCTACAAGCAGCACATCATACCCGTCTGTCTGCCTCCTTCCAC
CACCAAATTGACTGGTAAAATGGCCACTGTGGCTGGGTGGGGGCGAACCC
GACACGGCCAGAGCACAGTTCCCTCCGTACTGCAGGAGGTGGACGTGGAG
GTGATCTCGAATGATCGCTGTCAGCGATGGTTCCGGGCAGCGGGTCGCCG
AGAGGCCATCCACGATGTCTTCTTGTGCGCAGGCTACAAGGATGGCGGCC
GGGATTCGTGTCAGGGCGACAGTGGTGGTCCACTAACATTGACCATGGAC
GGTCGCAAGACCCTGATCGGATTGGTGTCCTGGGGCATTGGCTGTGGGAG
GGAACACCTGCCCGGCGTCTATACGAACATCCAGCGTTTCGTGCCCTGGA
TCAACAAGGTTATGGCCAATGACAACGCGTAGAAGCTTTCTAGACCAT
BS27948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8172-RD | 1116 | CG8172-PD | 1..1116 | 17..1132 | 5580 | 100 | Plus |
| CG8172-RF | 1686 | CG8172-PF | 914..1686 | 360..1132 | 3865 | 100 | Plus |
| CG8172-RE | 1638 | CG8172-PE | 866..1638 | 360..1132 | 3865 | 100 | Plus |
| CG8172-RF | 1686 | CG8172-PF | 212..393 | 180..361 | 910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8172-RD | 1798 | CG8172-RD | 346..1461 | 17..1132 | 5580 | 100 | Plus |
| CG8172-RG | 1906 | CG8172-RG | 797..1569 | 360..1132 | 3865 | 100 | Plus |
| CG8172-RF | 2364 | CG8172-RF | 1255..2027 | 360..1132 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9007869..9008249 | 918..538 | 1905 | 100 | Minus |
| 2R | 25286936 | 2R | 9007571..9007786 | 1132..917 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 9011236..9011416 | 360..180 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 9008318..9008495 | 537..360 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 9013019..9013181 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:09:30 has no hits.
BS27948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:25 Download gff for
BS27948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8172-RD | 328..1443 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:59 Download gff for
BS27948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8172-RD | 346..1461 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:23 Download gff for
BS27948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8172-RD | 346..1461 | 17..1132 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:23 Download gff for
BS27948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9007571..9007786 | 917..1132 | 100 | <- | Minus |
| 2R | 9007871..9008249 | 538..916 | 100 | <- | Minus |
| 2R | 9008318..9008495 | 360..537 | 100 | <- | Minus |
| 2R | 9011237..9011416 | 180..359 | 100 | <- | Minus |
| 2R | 9013019..9013181 | 17..179 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:59 Download gff for
BS27948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4898742..4898921 | 180..359 | 100 | <- | Minus |
| arm_2R | 4895076..4895291 | 917..1132 | 100 | <- | Minus |
| arm_2R | 4900524..4900686 | 17..179 | 100 | | Minus |
| arm_2R | 4895376..4895754 | 538..916 | 100 | <- | Minus |
| arm_2R | 4895823..4896000 | 360..537 | 100 | <- | Minus |
BS27948.pep Sequence
Translation from 16 to 1131
> BS27948.pep
MRPPQQLLVLLLATVAAAGHSSYNSVYNEVIPPKLKQAIDQELPKEAKFF
DELDLIPQSCRFRGHKFECGLSISCVLGGGKPLDLCSGGMIWSCCVDKDL
DAEESPHAAPVNNTSCGEVYTRSNRIVGGHSTGFGSHPWQVALIKSGFLT
RKLSCGGALISNRWVITAAHCVASTPNSNMKIRLGEWDVRGQEERLNHEE
YGIERKEVHPHYNPADFVNDVALIRLDRNVVYKQHIIPVCLPPSTTKLTG
KMATVAGWGRTRHGQSTVPSVLQEVDVEVISNDRCQRWFRAAGRREAIHD
VFLCAGYKDGGRDSCQGDSGGPLTLTMDGRKTLIGLVSWGIGCGREHLPG
VYTNIQRFVPWINKVMANDNA*
BS27948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8172-PD | 371 | CG8172-PD | 1..371 | 1..371 | 2006 | 100 | Plus |
| CG8172-PE | 545 | CG8172-PE | 290..545 | 116..371 | 1392 | 100 | Plus |
| CG8172-PF | 561 | CG8172-PF | 306..561 | 116..371 | 1392 | 100 | Plus |
| CG8172-PG | 192 | CG8172-PG | 1..192 | 180..371 | 1045 | 100 | Plus |
| Sb-PB | 787 | CG4316-PB | 543..782 | 125..362 | 626 | 49.4 | Plus |
| CG8172-PE | 545 | CG8172-PE | 1..115 | 1..115 | 614 | 100 | Plus |
| CG8172-PF | 561 | CG8172-PF | 71..131 | 55..115 | 340 | 98.4 | Plus |
