BS27950.complete Sequence
866 bp assembled on 2011-09-30
GenBank Submission: KX800504
> BS27950.complete
GAAGTTATCAGTCGACATGTACTGGATTTTGCTGTTGACGTCTCTCTTGC
CATGGCATCCCCATGCAACTGCCCAATTTCTGGAACCCGATTGTGGATAT
ATGTCACCGGAGGCACTCCAAAATGAGGAGCACCAGGCGCACATATCCGA
GAGTCCTTGGATGGCTTACTTGCACAAATCTGGCGAGCTTGTATGTGGCG
GAACTCTCGTAAATCATCGATTCATCCTGACAGCAGCACATTGCATACGA
GAGGATGAAAACTTGACTGTGCGACTGGGCGAGTTCAACAGCTTAACTAG
TATCGACTGCAACGGCTCCGATTGCCTGCCACCTTCCGAGGATTTTGAAA
TAGATGTGGCCTTCAGGCATGGGGGCTATTCCAGAACCAATAGGATCCAC
GACATTGGACTTCTCCGGCTGGCCAAGTCGGTGGAGTATAAAGTTCACAT
TAAGCCCATTTGCCTGATCACAAATACGACCCTTCAGCCGAAGATTGAAA
GACTCCACAGGCTGGTAGCCACTGGCTGGGGCCGCAGCCCATCGGAAGCT
GCAAACCACATCCTAAAGTCCATTCGCGTAACCAGAGTGAATTGGGGTGT
GTGCAGCAAAACATACTGGGTTGACCGTCGTAGGGATCAGATCTGCGTGA
GTCACGAGTCCGGAGTGTCGTGCAGCGGCGACTCCGGCGGACCCATGGGC
CAAGCCATTCGGCTCGACGGTCGAGTGCTCTTCGTTCAGGTCGGAATCGT
TAGCTATGGCAACGCTGAGTGCCTCAGTCCCAGTGTTTTCACAAACGTGA
TGGAACATATTGATTGGATAATGGCGGCGTTGAGCACAACTCACATTTGA
AAGCTTTCTAGACCAT
BS27950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30286-RB | 834 | CG30286-PB | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG30286-RC | 459 | CG30286-PC | 1..427 | 17..443 | 2135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30286-RB | 904 | CG30286-RB | 12..846 | 17..851 | 4175 | 100 | Plus |
| CG30286-RC | 967 | CG30286-RC | 12..438 | 17..443 | 2135 | 100 | Plus |
| CG30286-RC | 967 | CG30286-RC | 500..909 | 442..851 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21535774..21536183 | 851..442 | 2050 | 100 | Minus |
| 2R | 25286936 | 2R | 21536582..21536784 | 219..17 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 21536245..21536423 | 443..265 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 21536481..21536527 | 265..219 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:53:40 has no hits.
BS27950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:59 Download gff for
BS27950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 12..844 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:59 Download gff for
BS27950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 12..844 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:31 Download gff for
BS27950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 12..844 | 17..849 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:31 Download gff for
BS27950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21535776..21536181 | 444..849 | 100 | <- | Minus |
| 2R | 21536245..21536423 | 265..443 | 100 | <- | Minus |
| 2R | 21536482..21536527 | 219..264 | 100 | <- | Minus |
| 2R | 21536583..21536784 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:59 Download gff for
BS27950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17423750..17423928 | 265..443 | 100 | <- | Minus |
| arm_2R | 17423987..17424032 | 219..264 | 100 | <- | Minus |
| arm_2R | 17424088..17424289 | 17..218 | 100 | | Minus |
| arm_2R | 17423281..17423686 | 444..849 | 100 | <- | Minus |
BS27950.pep Sequence
Translation from 16 to 849
> BS27950.pep
MYWILLLTSLLPWHPHATAQFLEPDCGYMSPEALQNEEHQAHISESPWMA
YLHKSGELVCGGTLVNHRFILTAAHCIREDENLTVRLGEFNSLTSIDCNG
SDCLPPSEDFEIDVAFRHGGYSRTNRIHDIGLLRLAKSVEYKVHIKPICL
ITNTTLQPKIERLHRLVATGWGRSPSEAANHILKSIRVTRVNWGVCSKTY
WVDRRRDQICVSHESGVSCSGDSGGPMGQAIRLDGRVLFVQVGIVSYGNA
ECLSPSVFTNVMEHIDWIMAALSTTHI*
BS27950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30286-PB | 277 | CG30286-PB | 1..277 | 1..277 | 1494 | 100 | Plus |
| CG30286-PC | 152 | CG30286-PC | 1..142 | 1..142 | 775 | 100 | Plus |
| CG30090-PA | 291 | CG30090-PA | 23..283 | 20..277 | 547 | 39.5 | Plus |
| CG30083-PB | 279 | CG30083-PB | 1..256 | 1..269 | 506 | 37.7 | Plus |
| CG30087-PA | 277 | CG30087-PA | 7..274 | 3..272 | 495 | 37.4 | Plus |
