BS27953.complete Sequence
1337 bp assembled on 2011-09-30
GenBank Submission: KX803673
> BS27953.complete
GAAGTTATCAGTCGACATGATGAACTTCTCCGCGTTCGGCGGCCCCTTCT
CCGGCATCCACCAATTTGCCGCTAAATTCGACGCCCAGACGCCGGGCGCC
TTCGGCACGCCCCCCGCGGCTGCCGCGAATGCAGCAGCCGCAGCGGCAGC
GGCCGGCACCGATAACCATGTGCAGCGATATCAGACCAATGGCAATCACT
TTAATCAGAATGTGCCCAACGTTTCGGCTGCCAACAACATGCAATATGGC
CAGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCT
CAATGCAGCCGCTGCGGCCGATCATAAGGTCCTCAACCAGCAGATCCTGC
AGAATGTCAACCAATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTG
GACTACTCGTCACACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCA
CTTCCTCAAGTACTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCC
TGAAGAACGGCACCAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTA
ACGCCCAGCAACAACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGG
CATGGACCATGGCGGTCACATGACCAACATGACGGACGCCAACGGAGCGG
CGCTGACGAACGGAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACT
GTGACCAATGGTGGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCAC
AACAAACGCCAGCGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAA
AGAAGAAACCACCAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATC
CGCGAGACAAAGGCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTG
CCAAATGGCCTACCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGC
ACGCCGTTGAGCGGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAG
CGCAAGGACCACCTGACCAGGCACAAGCTCTCCCACATACCGGACAGGCC
GCATGTGTGCAATATCTGCATGAAGTCCTTCAAGCGCAAGGAGCAGCTCA
CTCTGCACATTGTCATCCATTCCGGCGAGAAGAAGCATGTTTGCATTGAG
TGTGGAAAAGGTTTCTATCGCAAGGATCACTTGCGCAAGCACACACGATC
GCACATCGCCCGGCGTGTCAAGTCGGAGGTGTCGGCGCAGAACGTTAACG
GATCCGCCGGAGGCGGTGGCGGCGGTGGAGGCGGCAACAGTGCGCAGAGC
AACGCGCTGCACGGCTCCTGAAAGCTTTCTAGACCAT
BS27953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RD | 1305 | CG6930-PD | 1..1305 | 17..1321 | 6525 | 100 | Plus |
| l(3)neo38-RJ | 1083 | CG6930-PJ | 1..1083 | 239..1321 | 5415 | 100 | Plus |
| l(3)neo38-RG | 1083 | CG6930-PG | 1..1083 | 239..1321 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RD | 4963 | CG6930-RD | 1212..2519 | 14..1321 | 6540 | 100 | Plus |
| l(3)neo38-RJ | 3691 | CG6930-RJ | 148..1247 | 222..1321 | 5500 | 100 | Plus |
| l(3)neo38-RG | 3815 | CG6930-RG | 272..1371 | 222..1321 | 5500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769370..11770104 | 1063..329 | 3675 | 100 | Minus |
| 3R | 32079331 | 3R | 11777474..11777681 | 221..14 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 11768840..11769002 | 1321..1159 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 11771193..11771301 | 329..221 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 11769056..11769154 | 1162..1064 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 11603938..11604196 | 964..1222 | 470 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:55:48 has no hits.
BS27953.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:00 Download gff for
BS27953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1191..2494 | 17..1320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:46:08 Download gff for
BS27953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1215..2518 | 17..1320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:22 Download gff for
BS27953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1215..2518 | 17..1320 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:22 Download gff for
BS27953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11768841..11769000 | 1161..1320 | 100 | <- | Minus |
| 3R | 11769058..11769154 | 1064..1160 | 100 | <- | Minus |
| 3R | 11769370..11770103 | 330..1063 | 100 | <- | Minus |
| 3R | 11771193..11771300 | 222..329 | 100 | <- | Minus |
| 3R | 11777474..11777678 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:46:08 Download gff for
BS27953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7594563..7594722 | 1161..1320 | 100 | <- | Minus |
| arm_3R | 7594780..7594876 | 1064..1160 | 100 | <- | Minus |
| arm_3R | 7595092..7595825 | 330..1063 | 100 | <- | Minus |
| arm_3R | 7596915..7597022 | 222..329 | 100 | <- | Minus |
| arm_3R | 7603196..7603400 | 17..221 | 100 | | Minus |
BS27953.pep Sequence
Translation from 16 to 1320
> BS27953.pep
MMNFSAFGGPFSGIHQFAAKFDAQTPGAFGTPPAAAANAAAAAAAAGTDN
HVQRYQTNGNHFNQNVPNVSAANNMQYGQNISIPYSQPQGDLNFLNAAAA
ADHKVLNQQILQNVNQSWQTLANTANTVDYSSHLLSATLPISIQHFLKYS
ETIKKESTGDVLKNGTNLASLALGGVALTPSNNGANGGHHNGLVGMDHGG
HMTNMTDANGAALTNGASNGVNGNANGTVTNGGAGAVSSSGSVGTTNASG
GTGTASGKKTKKKKPPKEKKPRPKPGEIRETKALDGSTLYCCPECQMAYP
DRSLIEQHVISHAVERRFVCDICNAALKRKDHLTRHKLSHIPDRPHVCNI
CMKSFKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDHLRKHTRSHIARR
VKSEVSAQNVNGSAGGGGGGGGGNSAQSNALHGS*
BS27953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-PD | 434 | CG6930-PD | 1..434 | 1..434 | 2299 | 100 | Plus |
| l(3)neo38-PL | 455 | CG6930-PL | 1..447 | 1..434 | 2275 | 97.1 | Plus |
| l(3)neo38-PK | 447 | CG6930-PK | 1..447 | 1..434 | 2275 | 97.1 | Plus |
| l(3)neo38-PC | 447 | CG6930-PC | 1..447 | 1..434 | 2275 | 97.1 | Plus |
| l(3)neo38-PB | 447 | CG6930-PB | 1..447 | 1..434 | 2275 | 97.1 | Plus |
