BS27956.complete Sequence
2198 bp assembled on 2013-09-16
GenBank Submission: KX801006
> BS27956.complete
GAAGTTATCAGTCGACATGATTGGCAAGATGCAAACGAAGGTGTTTCTGC
TGTGCCTGGTACTTTCCTTGGGAACATTTCCGACCGCTCAGGGACAATCG
GATGCCGGGAACGATGAGGAGCAACCACTCCATTTGACCAACGACGCGTC
TTTCTTTCAGCCACATTTGCACGATCGACGACTGGGTCGCCAGTTGATCG
AGGATCTCGCCGAGAGCCAGAGCTCGGCCAGCAGTGTCAGCAGCGGCAGC
AGTCAGTCCGGCTCCGCCTACGAGGATGACGATGACGACGTCGAGGGTTC
CAGTGAGTACTACGATAGCGACGAGGAACAGTCCGAGGGCAGCAACGAAT
CCCTGCCTCGTTTGCTCTCCCAATCCACCTTTAATCGCATCTCTGAGACC
TTGGGAGCGCTCAACCATGTGGGGCACATGCTGGTGGACATAACTCGCGG
TGGACAGGATCAGGCCAAAATGGAGGGGGCGGAGAAGAGTGAGGATACAA
GCCAGGACAATAGTCAGTCGGGTGGATCGTCCAGCGCAACCGCAAGTGCT
TCCAGCACCACCGAAGTGGTTCCCTCTTCCACATCCTCCCCACGAGGAAA
TTCCGAGCAACTGCCAGGAGTCTCAGACAAACTTATGGATCCTCTACCGA
TTACACTCTCTGCCAATAGTTTACTACCAGCTGGCAAGCCTGCGAATCTG
AGTGTCATCCAAGTGGCAACTAAAAGAATCGGTATGGATGACTCTGCTCC
CATGTTTGTGGAGAACAAGGAGCTGAAGCTAAAGAAGAAAAAGAAGAAGA
ATAAGAACAAGCAGAAGGTCAAGAAGCCCAGTGAAGAAGGTGTCCTGGTT
CCGGTAGCCCAGGGTGCTCAGCAATCGCAGCAGAAGATCAAGATACCCAC
TACTCCGCGCACCACAACTACGTCCACCACCACAGAGGCACCTATTACTC
TGACCCCATTGGATCAGTTGGCAGAGGCTAGTGATGAGGCAGGAACCGGG
AAAGATGTGGAAAACTACTGCAAAACGCCAAGTGGAAGGCGAGGACGTTG
CGAGGATCTCAGCAGTTGTCCCGCTCTGCTGCTGAATCTCAGCAGCTTGA
GAGAGTCCCTGTGCTTCAAGAGTCTCTATGTGCCGGGCGTGTGCTGCCCC
ATTTCCTCATCCTCCACTGTTTTGACCACTCAGAAACCTCTGAGGCTGAC
CACTCGTCCCACGACGACCACCAGCACCACCAAGGCTACGCAACCCACGA
AGAAAAGCACTGTTCGACCCACCACGCGCCCCACATCTGGTCTCGTGCTC
ATTCCCCAGAAGAAACCGCCCACTACCACGACGACCACCACGACGGAGGT
GCCTCTGGAGCCGGAGGGTCTGGACGAGATCGGCAACAACATTGTGGACC
CCGATGAGTGCGGTCAGCAGGAGTACTCAACTGGTAGGATTGTGGGCGGA
GTGGAGGCTCCGAATGGTCAGTGGCCATGGATGGCAGCCATTTTTCTCCA
TGGACCCAAGCGCACGGAGTTCTGGTGCGGTGGTTCGTTGATTGGCACCA
AATATATCCTGACAGCTGCGCATTGTACGCGGGACTCGCGTCAAAAACCA
TTTGCTGCTCGACAGTTTACGGTTCGCTTGGGTGACATCGATCTGTCAAC
GGATGCGGAACCCTCTGATCCCGTGACCTTCGCCGTCAAGGAAGTGCGCA
CCCATGAGCGATTCTCCCGCATTGGATTCTACAATGACATTGCCATCCTT
GTTTTGGATAAGCCCGTGAGGAAATCAAAGTATGTAATCCCTGTCTGCCT
GCCAAAGGGAATCAGGATGCCGCCCAAGGAACGGCTTCCCGGACGTAGAG
CCACCGTTGTGGGCTGGGGCACCACCTACTACGGTGGTAAGGAGTCCACC
AGCCAACGACAGGCGGAACTGCCCATTTGGCGGAATGAGGATTGCGACCG
CAGTTACTTCCAGCCTATCAACGAGAACTTCATCTGCGCAGGATACTCCG
ATGGCGGAGTGGATGCTTGTCAGGGCGATTCTGGCGGTCCTTTGATGATG
CGATATGATTCCCACTGGGTTCAACTGGGAGTGGTGTCCTTTGGCAACAA
GTGTGGTGAGCCGGGATATCCAGGTGTCTATACTCGAGTCACTGAATACC
TTGACTGGATACGCGATCACACGAGGGATTAAAAGCTTTCTAGACCAT
BS27956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7432-RB | 2166 | CG7432-PB | 1..2166 | 17..2182 | 10830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7432-RB | 2921 | CG7432-RB | 549..2714 | 17..2182 | 10830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19668354..19669807 | 146..1599 | 7270 | 100 | Plus |
| 3R | 32079331 | 3R | 19670027..19670341 | 1710..2024 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 19669864..19669974 | 1600..1710 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 19670398..19670502 | 2021..2125 | 525 | 100 | Plus |
| 3R | 32079331 | 3R | 19668204..19668291 | 59..146 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 19670556..19670620 | 2118..2182 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 19665555..19665597 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:03:17 has no hits.
BS27956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:59 Download gff for
BS27956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 549..2712 | 17..2180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:16 Download gff for
BS27956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 549..2712 | 17..2180 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:16 Download gff for
BS27956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19669864..19669974 | 1600..1710 | 100 | -> | Plus |
| 3R | 19665555..19665597 | 17..59 | 100 | -> | Plus |
| 3R | 19668205..19668291 | 60..146 | 100 | -> | Plus |
| 3R | 19668355..19669807 | 147..1599 | 100 | -> | Plus |
| 3R | 19670028..19670340 | 1711..2023 | 100 | -> | Plus |
| 3R | 19670401..19670500 | 2024..2123 | 100 | -> | Plus |
| 3R | 19670562..19670618 | 2124..2180 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:59 Download gff for
BS27956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15493927..15494013 | 60..146 | 100 | -> | Plus |
| arm_3R | 15491277..15491319 | 17..59 | 100 | -> | Plus |
| arm_3R | 15494077..15495529 | 147..1599 | 100 | -> | Plus |
| arm_3R | 15495586..15495696 | 1600..1710 | 100 | -> | Plus |
| arm_3R | 15495750..15496062 | 1711..2023 | 100 | -> | Plus |
| arm_3R | 15496123..15496222 | 2024..2123 | 100 | -> | Plus |
| arm_3R | 15496284..15496340 | 2124..2180 | 100 | | Plus |
BS27956.pep Sequence
Translation from 16 to 2181
> BS27956.pep
MIGKMQTKVFLLCLVLSLGTFPTAQGQSDAGNDEEQPLHLTNDASFFQPH
LHDRRLGRQLIEDLAESQSSASSVSSGSSQSGSAYEDDDDDVEGSSEYYD
SDEEQSEGSNESLPRLLSQSTFNRISETLGALNHVGHMLVDITRGGQDQA
KMEGAEKSEDTSQDNSQSGGSSSATASASSTTEVVPSSTSSPRGNSEQLP
GVSDKLMDPLPITLSANSLLPAGKPANLSVIQVATKRIGMDDSAPMFVEN
KELKLKKKKKKNKNKQKVKKPSEEGVLVPVAQGAQQSQQKIKIPTTPRTT
TTSTTTEAPITLTPLDQLAEASDEAGTGKDVENYCKTPSGRRGRCEDLSS
CPALLLNLSSLRESLCFKSLYVPGVCCPISSSSTVLTTQKPLRLTTRPTT
TTSTTKATQPTKKSTVRPTTRPTSGLVLIPQKKPPTTTTTTTTEVPLEPE
GLDEIGNNIVDPDECGQQEYSTGRIVGGVEAPNGQWPWMAAIFLHGPKRT
EFWCGGSLIGTKYILTAAHCTRDSRQKPFAARQFTVRLGDIDLSTDAEPS
DPVTFAVKEVRTHERFSRIGFYNDIAILVLDKPVRKSKYVIPVCLPKGIR
MPPKERLPGRRATVVGWGTTYYGGKESTSQRQAELPIWRNEDCDRSYFQP
INENFICAGYSDGGVDACQGDSGGPLMMRYDSHWVQLGVVSFGNKCGEPG
YPGVYTRVTEYLDWIRDHTRD*
BS27956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7432-PB | 721 | CG7432-PB | 1..721 | 1..721 | 3769 | 100 | Plus |
| CG31728-PC | 639 | CG31728-PC | 327..634 | 396..715 | 501 | 38.9 | Plus |
| CG1299-PB | 442 | CG1299-PB | 62..440 | 293..721 | 490 | 31 | Plus |
| CG1299-PA | 511 | CG1299-PA | 131..509 | 293..721 | 490 | 31 | Plus |
| CG9372-PA | 408 | CG9372-PA | 164..402 | 465..715 | 470 | 38.2 | Plus |
