BS27958.complete Sequence
1514 bp assembled on 2011-09-30
GenBank Submission: KX805642
> BS27958.complete
GAAGTTATCAGTCGACATGGGCACGCAATGCTATCAATGCCACCTTAAAT
CGACCCTCTATTTTCAACTGTACATTCAACGAATCATGAATGCCGCACAA
ACAAAATACAAAATTAACGAGCTAGATATTCGCCCACATGGACAATCTCG
TGAACTGCCAGTGCTTCCCCGTTCGGAAAGCACTTCTGAGTTTATGCCCT
TGGAAGAGAAGGAAGTTGAGTACTTTTTCGCATCGGACGCCTCAGCCGTC
ATAGAGCACACTAACCGGGTCATCTATTTGGAGGACGACGATGTTGCTGC
TGTTCGGGATGGAACTTTGAGTATACATCGCCTAAAGAAGAGCCTGGATG
ATCCGCACGCTCGCGAAATCACTACCCTAAAAATGGAAATTCAACAGATC
ATGAAGGGAAACTATGACTATTTTATGCAAAAGGAGATTTTCGAGCAGCC
CGACTCCGTGGTGAACACAATGCGCGGTCGCGTCCGCTTCGATGGTAACG
CCATAGTGCTCGGCGGGATCAAAGACTACATTCCTGAAATCAAACGCTGT
CGACGCCTGATGTTGATTGGATGTGGCACATCTTACCACAGCGCTGTAGC
CACTAGGCAGCTGCTCGAAGAACTCACAGAGCTTCCCGTGATGGTTGAGC
TGGCTTCCGACTTTTTAGACCGAAACACTCCTATTTTTCGAGACGACGTC
TGCTTTTTTATATCGCAGTCCGGAGAGACTGCCGACACCCTGATGGCCTT
ACGTTACTGTAAGCAGCGAGGAGCCCTGATTGTGGGCATTACGAATACCG
TAGGCAGCAGCATATGTCGGGAATCGCATTGTGGAGTGCACATTAATGCC
GGACCAGAGATAGGCGTGGCCTCGACCAAGGCATACACCTCCCAATTCAT
TTCCCTGGTGATGTTCGCTCTAGTTATGTCCGAAGATCGACTGTCACTGC
AACAGCGACGGCTTGAGATTCTGCAGGCGTTGTCCAAGCTCGCGGATCAA
ATCCGAGACGTTCTGCAGCTGGACTCCAAAGTTAAAGAACTGGCCAAAGA
CCTATACCAACACAAGTCGCTTCTGATAATGGGTAGGGGCTACAACTTTG
CCACTTGCCTAGAAGGTGCATTGAAAGTCAAAGAGTTGACTTACATGCAC
AGCGAGGGCATCATGGCCGGTGAATTGAAGCACGGCCCACTGGCTCTCGT
AGACGACTCCATGCCCGTGCTGATGATTGTTTTGCGGGACCCCGTTTACG
TAAAGTGCATGAACGCTCTACAGCAGGTCACATCCCGCAAAGGATGCCCG
ATTATTATCTGCGAGGAGGGAGACGAGGAGACCAAGGCTTTCTCCTCCCG
CCATCTAGAGATTCCTCGCACCGTCGACTGCCTGCAAGGAATTCTCACCG
TTATCCCAATGCAACTACTGTCTTATCATATTGCCGTGCTTCGCGGATGC
GACGTTGACTGTCCTAGAAACTTAGCAAAGTCTGTGACAGTTGAGTAAAA
GCTTTCTAGACCAT
BS27958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-RK | 1482 | CG12449-PK | 1..1482 | 17..1498 | 7410 | 100 | Plus |
| Gfat1-RH | 2058 | CG12449-PH | 684..2058 | 124..1498 | 6875 | 100 | Plus |
| Gfat1-RA | 2085 | CG12449-PA | 711..2085 | 124..1498 | 6875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-RK | 3726 | CG12449-RK | 2057..3539 | 17..1499 | 7415 | 100 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 1039..2414 | 124..1499 | 6880 | 100 | Plus |
| Gfat1-RA | 2426 | CG12449-RA | 864..2239 | 124..1499 | 6880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4136419..4137260 | 282..1123 | 4210 | 100 | Plus |
| 3R | 32079331 | 3R | 4137319..4137695 | 1123..1499 | 1885 | 100 | Plus |
| 3R | 32079331 | 3R | 4135115..4135382 | 17..284 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 28338036..28338787 | 957..209 | 1235 | 77.9 | Minus |
| 3R | 32079331 | 3R | 28337294..28337668 | 1497..1123 | 570 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:51:50 has no hits.
BS27958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:57 Download gff for
BS27958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RK | 2060..3539 | 17..1496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:33 Download gff for
BS27958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RK | 2057..3536 | 17..1496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:42 Download gff for
BS27958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RK | 2057..3536 | 17..1496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:42 Download gff for
BS27958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4135115..4135381 | 17..283 | 100 | -> | Plus |
| 3R | 4136421..4137260 | 284..1123 | 100 | -> | Plus |
| 3R | 4137320..4137692 | 1124..1496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:33 Download gff for
BS27958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2478881..2479147 | 17..283 | 100 | -> | Plus |
| 3RHet | 2480187..2481026 | 284..1123 | 100 | -> | Plus |
| 3RHet | 2481086..2481458 | 1124..1496 | 100 | | Plus |
BS27958.pep Sequence
Translation from 16 to 1497
> BS27958.pep
MGTQCYQCHLKSTLYFQLYIQRIMNAAQTKYKINELDIRPHGQSRELPVL
PRSESTSEFMPLEEKEVEYFFASDASAVIEHTNRVIYLEDDDVAAVRDGT
LSIHRLKKSLDDPHAREITTLKMEIQQIMKGNYDYFMQKEIFEQPDSVVN
TMRGRVRFDGNAIVLGGIKDYIPEIKRCRRLMLIGCGTSYHSAVATRQLL
EELTELPVMVELASDFLDRNTPIFRDDVCFFISQSGETADTLMALRYCKQ
RGALIVGITNTVGSSICRESHCGVHINAGPEIGVASTKAYTSQFISLVMF
ALVMSEDRLSLQQRRLEILQALSKLADQIRDVLQLDSKVKELAKDLYQHK
SLLIMGRGYNFATCLEGALKVKELTYMHSEGIMAGELKHGPLALVDDSMP
VLMIVLRDPVYVKCMNALQQVTSRKGCPIIICEEGDEETKAFSSRHLEIP
RTVDCLQGILTVIPMQLLSYHIAVLRGCDVDCPRNLAKSVTVE*
BS27958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-PK | 493 | CG12449-PK | 1..493 | 1..493 | 2527 | 100 | Plus |
| Gfat1-PH | 685 | CG12449-PH | 229..685 | 37..493 | 2334 | 100 | Plus |
| Gfat1-PA | 694 | CG12449-PA | 238..694 | 37..493 | 2334 | 100 | Plus |
| Gfat1-PN | 694 | CG12449-PN | 238..694 | 37..493 | 2334 | 100 | Plus |
| Gfat1-PJ | 643 | CG12449-PJ | 187..643 | 37..493 | 2334 | 100 | Plus |
