BS27959.complete Sequence
1172 bp assembled on 2011-09-30
GenBank Submission: KX800527
> BS27959.complete
GAAGTTATCAGTCGACATGGGATCGATCGTGGCCACAGCAGCTATTCTTT
TATTCTGCGTCCTTTCGGGCGAAGCCTGTAGGTATTGTGTCCCTATGGAG
AAGTGCTTAATACTAAGTCGAAAACTAAATAGTTGCCCATTTAATCACGT
CTGTTGTGACATTATCATAAAGAGTCCTTATATCCCTAGCGGACCGAATG
AGGAATCCGATTCTGAGTCTGCATCATCTTCTACAGAAGAGGAAAACATA
CCAACCTTTATCTATTTTCCAACGAGACCAACAGTCTCAAGTGAGCCCCA
AAACAATGTTTCTACGGAACCTGATGTACCCATTACTTATTGGCCACTTA
AAGGATCGGGCGCCCCAACAAATGATGGTGCGCAAGCTGAGCAACCAAAG
CCAACTGAACGGACACAGCCAGGAGGCAGGTGCAATACGACTGGTCTATA
TTCCTGGGTGGTAGCCCTATTTTACGAAGAAGTTTACTTGACCGGCGGCT
CACTAATTAGTCCAAAAGTGATCCTAACGGCAGCCCACAACACAATGAAC
AAAATGAATGAAGATAGAATTGTGGTTAGGGCCGGCGAGTTTGTCATGAA
CACAACAAATGAACCCATTCAGTATGAGGAGCGCGTTGTTGAAAGGATTG
TGAGACATGAAGGATTCATTTTTCAGTCGGGTATTAATAATGTGGCTCTT
ATTTTCGTAAAAACACCGTTCGTGCTAAACGATCGCATTGGAGTATTGAC
GTTGCCAAGCCGACAAGCGTCGTTCGAGGGACGTCGCTGTACGGTTGCCG
GTTGGGACTTGGTGAGTTCCCATGATCAAAGCCGTATGAGAATTATAAAG
AAATTAGAGTTAACCGTGTTGGACAGAACGACATGCGTGGCTCAGTTTAG
AAATACAACTTTGGGCAGGAATTTTGATCTTCATCCGAGTCTGATTTGCG
CCCGAAGTGAAATAAACCGGGATTTCTGCTTTGGCGGTGGAGGTTATGCA
TTGTTCTGCTCCCTCGGAGATGAGAATCCACACGTCTTCGAGCAGGCTGG
GATCGTCGCCTGGGGCATGGGGTGTGGATTGGACCTCCCGGGAATCTACA
CCAATGTGGCAATGTTCAGAAGTTGGATTTATAATAGGATAGCATACTTT
GGCTAAAAGCTTTCTAGACCAT
BS27959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18563-RB | 1140 | CG18563-PB | 1..1140 | 17..1156 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18563-RB | 1251 | CG18563-RB | 18..1159 | 15..1156 | 5710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17456762..17457694 | 1156..224 | 4665 | 100 | Minus |
| 2L | 23513712 | 2L | 17457870..17458027 | 172..15 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 17457756..17457808 | 223..171 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:52:02 has no hits.
BS27959.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:58 Download gff for
BS27959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18563-RB | 1..1138 | 17..1154 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:38 Download gff for
BS27959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18563-RB | 20..1157 | 17..1154 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:48 Download gff for
BS27959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18563-RB | 20..1157 | 17..1154 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:48 Download gff for
BS27959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17457870..17458025 | 17..172 | 100 | | Minus |
| 2L | 17456764..17457694 | 224..1154 | 100 | <- | Minus |
| 2L | 17457756..17457806 | 173..223 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:38 Download gff for
BS27959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17456764..17457694 | 224..1154 | 100 | <- | Minus |
| arm_2L | 17457756..17457806 | 173..223 | 100 | <- | Minus |
| arm_2L | 17457870..17458025 | 17..172 | 100 | | Minus |
BS27959.pep Sequence
Translation from 16 to 1155
> BS27959.pep
MGSIVATAAILLFCVLSGEACRYCVPMEKCLILSRKLNSCPFNHVCCDII
IKSPYIPSGPNEESDSESASSSTEEENIPTFIYFPTRPTVSSEPQNNVST
EPDVPITYWPLKGSGAPTNDGAQAEQPKPTERTQPGGRCNTTGLYSWVVA
LFYEEVYLTGGSLISPKVILTAAHNTMNKMNEDRIVVRAGEFVMNTTNEP
IQYEERVVERIVRHEGFIFQSGINNVALIFVKTPFVLNDRIGVLTLPSRQ
ASFEGRRCTVAGWDLVSSHDQSRMRIIKKLELTVLDRTTCVAQFRNTTLG
RNFDLHPSLICARSEINRDFCFGGGGYALFCSLGDENPHVFEQAGIVAWG
MGCGLDLPGIYTNVAMFRSWIYNRIAYFG*
BS27959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18563-PB | 379 | CG18563-PB | 1..379 | 1..379 | 2019 | 100 | Plus |
| SPH93-PA | 494 | CG6639-PA | 205..489 | 110..378 | 593 | 44.3 | Plus |
| CG14990-PA | 322 | CG14990-PA | 67..302 | 140..376 | 529 | 46.2 | Plus |
| CG3117-PB | 347 | CG3117-PB | 69..328 | 92..371 | 467 | 39.5 | Plus |
| CG18478-PA | 294 | CG18478-PA | 55..284 | 145..375 | 455 | 41.4 | Plus |
