BS27961.complete Sequence
2561 bp assembled on 2013-09-16
GenBank Submission: KX806047
> BS27961.complete
GAAGTTATCAGTCGACATGCGCAAGTATCGCAACAAGCTGCAGCGCTCCG
GAATCGAGGACTGCGCCTTAGTGGGTCACCATCCCGGCAGCATTCAGCAC
CATCATCCCGGCGTGGTCGTCGATAGCGATAGCGAGTTCGAGATGAAGGA
CAAGAGTTCGTCACGGGCCAAGTTTAGCCGGACGATCTCGCTGCAGCAGC
GAAATTTCAAGCAAAAGATCGTGGCACTTTTGAAGCGGTTCAAGGTGAGC
GAGGAGCTGGAGGGAGAGTCCGGTCATCGAGGCACGGCGGCGCTGCGCGG
AGAACGCGACCTGGATGCGCTCTTCCAGGAGCTGGAGTCGCTGTCCTGTT
GCGAGGGCGACGACTCCGGACCGGACATGGACAGCATATCGGTGGGCTCC
ACGCCGAAGCCATCGCTGCGTCCCTTCTTCACCAACTCGCGGATTATGTT
GCACGACAACATCACCGGAAACGGCGGAGATCTGAGCCAATTGGTGGGCG
GTGGCCTTGGACCCGGAACCGGAACAGCTGGCAACTCTGAGCGCCGATCA
TCGGATAAGAGCGACCAATTGACCAATTCATCTTACAATCTTGAAAATAA
CAAAAACCAAAAATGCATTCATTTAACAAACAATAACAATTCGGCAACAA
CACCAGATCGCGGGGGTAATGACAGTTCCGGCAATGAGGGCAACGCTGGC
TATACGGATGGCCAGAACTCTGATCCGCAAAATAGTCCGCCCAGGGACAA
GGACTACCTGCGCCTGCAGCAGATGCAGCAGCAGCAGTTGACCCCAGTGA
GCTCTGTGGCTGCCAGCATGGGTAGCGGGAGCGTGATAACGCCCGCTCAG
ACGGAGAAGCGGTCACGATTGTTCCGAACTTCCAGCAATACTCCGGCAAA
TGCAGGAAGCGGTGGCAACAGTGTCAGTGCCATTAGCGCATCGGGAGGCG
GCAAGAGGAAGCACACCCTGAGCCTGAGTGCCGAGCCGAGATCCGTGCTA
GAGGCTTGCCTGTCGCCCACCAATGTGGAGCCACGCAAGCTGCTGCTCGA
CCAGCTGAGTCGCGTGTTCGCCGGCGAGGACAGCGCCATTCCGGAGGTGG
TGACCATCATTAGCCCGCCGGAGGCGTTGGGTGGCAGTGCGCTGCTGGCC
AAACTGGTCACGCTCTTTGCCAACTCCTTCAAGCCGGCCTTCGTGCCGCA
AAACACTGCCGAGGTCAAGGCGGTGCTGCAGGCGCTCATGGCCAAGATCC
AGAAGTATTGCAACTCCAACGCCAAGCCACCGCACACGGTGAAGGTGCTG
CTGATTGGTGGAGATTGGCTGCAGGGAGCCACTCTGCGACACTACGTCGA
ACTGATGGGAGTGCGCCCTCCAGATTGGCTGAATCACTTGCGCTTCTACC
TGGTCCCCGTCGGCGGCAGTTGCGGCAGTGTTGCCCGCCATCTCAGCCAG
ATGGATCAGGCATACGCGGTGATGTTTGGTTCGGACAACTGGACGCAGCT
GTGCGAACGGGCGGCAGCCACAGCGGCAGCGGTCAGTGCGGTGACCACAG
TGAATGCCACCGCGCTGACAACCAACCTCGCGGATGCGGCAGGTGTTGCC
AAGTCCGACATCGCAGAATTGGTGCAGCGTATTCAGCGCTACCTACTGGC
GGCAGGTCCCTGCACGCAGATACCCATTGCCGAAGCTATGGTTAACTACA
AGGACGAGGACTCCTGCCAGATATTTGTGCCGTTTGTTAGTGATGTTCGC
ATTGGGTATCTGGACGCCCAGGCCTCGCTGGATCTTGAAGAAAATGCAGC
TGGCTCCAACGCGGTCGGCAGTGGACTGGGTTCTGGATCCGCTTCAAGCT
CAGCCATCCCCATAGGCAGCCAGAGCTCGCCGAATGTGCACGGCGTTGTG
TCTGGCTCGCCGCCCCAGCAGCAGAGCTTGGGACGCATCTCACCGCCTCT
GCAAACGCCACCGTCATCCGCATCCTCTCATCGGGAGCGAAATACCAGTG
AATCGCTTAGTACGCCGTCGTCGGTGCAGCAGCAGTCTTTCAGTGGAGCT
CTTGCGGCGGCCGAAGCAGTGGAACTGCAAGTTGACTATTGGCCCCTGGT
GAGGCCGGGCGAAGGTCATGCCAAGGAGTCTAAGGGTGGCTTGTCCAAGG
GCAGCGACGCTGGCGGCAAGAATAGCATTAAGAGTACGTTTAGGAACCTG
CAGGTGTGGCGTCTGCCACAGCATGCACAGCAATTGGGTGATATGTTCAA
TGGACTGACTGTTAGTTTCGCCACCAAGGAAAAGAAGCAGAAGCAAATTA
TGCGCTTGGGCAAAAAGAAGGATAAGGAGCGTGATCTCGAGAAGGAGCAA
TGTGTGGAGGGCGTCGCCCGTTTGATTTGCTCACCGAAACAATCGCATCC
AGTGCCACTGCGAGTGTACATTGATGGCACCGAGTGGACGGGAGTCAAGT
TCTTCCAAGTATCGTCGCAATGGCAAACGCACGTCAAGAACTTTCCGATT
GCGCTCATCGGCTGCACTCCCATGTCCTGTGCTGAATTATCCTAGAAGCT
TTCTAGACCAT
BS27961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KrT95D-RD | 2529 | CG5405-PD | 1..2529 | 17..2545 | 12570 | 99.8 | Plus |
| KrT95D-RA | 3528 | CG5405-PA | 1000..3528 | 17..2545 | 12570 | 99.8 | Plus |
| KrT95D-RB | 3528 | CG5405-PB | 1000..3528 | 17..2545 | 12570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KrT95D-RD | 3121 | CG5405-RD | 395..2923 | 17..2545 | 12570 | 99.8 | Plus |
| KrT95D-RA | 5687 | CG5405-RA | 2059..4587 | 17..2545 | 12570 | 99.8 | Plus |
| KrT95D-RB | 4105 | CG5405-RB | 1379..3907 | 17..2545 | 12570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24000180..24000783 | 1257..654 | 3005 | 99.8 | Minus |
| 3R | 32079331 | 3R | 23999007..23999562 | 2297..1742 | 2735 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23999633..24000117 | 1742..1258 | 2425 | 100 | Minus |
| 3R | 32079331 | 3R | 24003415..24003765 | 531..181 | 1740 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24005688..24005852 | 181..17 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 23998638..23998770 | 2545..2413 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 24002422..24002548 | 656..530 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 23998830..23998946 | 2414..2298 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:03:34 has no hits.
BS27961.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:05 Download gff for
BS27961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RB | 1379..3907 | 17..2545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:20 Download gff for
BS27961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RB | 1379..3907 | 17..2545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:20 Download gff for
BS27961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24003416..24003764 | 182..530 | 99 | <- | Minus |
| 3R | 24005688..24005852 | 17..181 | 100 | | Minus |
| 3R | 23998638..23998768 | 2415..2545 | 100 | <- | Minus |
| 3R | 23998830..23998946 | 2298..2414 | 100 | <- | Minus |
| 3R | 23999007..23999562 | 1742..2297 | 99 | <- | Minus |
| 3R | 23999634..24000117 | 1258..1741 | 100 | <- | Minus |
| 3R | 24000180..24000780 | 657..1257 | 99 | <- | Minus |
| 3R | 24002422..24002547 | 531..656 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:05 Download gff for
BS27961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19824360..19824490 | 2415..2545 | 100 | <- | Minus |
| arm_3R | 19824552..19824668 | 2298..2414 | 100 | <- | Minus |
| arm_3R | 19824729..19825284 | 1742..2297 | 99 | <- | Minus |
| arm_3R | 19825356..19825839 | 1258..1741 | 100 | <- | Minus |
| arm_3R | 19825902..19826502 | 657..1257 | 99 | <- | Minus |
| arm_3R | 19828144..19828269 | 531..656 | 100 | <- | Minus |
| arm_3R | 19829138..19829486 | 182..530 | 99 | <- | Minus |
| arm_3R | 19831410..19831574 | 17..181 | 100 | | Minus |
BS27961.pep Sequence
Translation from 16 to 2544
> BS27961.pep
MRKYRNKLQRSGIEDCALVGHHPGSIQHHHPGVVVDSDSEFEMKDKSSSR
AKFSRTISLQQRNFKQKIVALLKRFKVSEELEGESGHRGTAALRGERDLD
ALFQELESLSCCEGDDSGPDMDSISVGSTPKPSLRPFFTNSRIMLHDNIT
GNGGDLSQLVGGGLGPGTGTAGNSERRSSDKSDQLTNSSYNLENNKNQKC
IHLTNNNNSATTPDRGGNDSSGNEGNAGYTDGQNSDPQNSPPRDKDYLRL
QQMQQQQLTPVSSVAASMGSGSVITPAQTEKRSRLFRTSSNTPANAGSGG
NSVSAISASGGGKRKHTLSLSAEPRSVLEACLSPTNVEPRKLLLDQLSRV
FAGEDSAIPEVVTIISPPEALGGSALLAKLVTLFANSFKPAFVPQNTAEV
KAVLQALMAKIQKYCNSNAKPPHTVKVLLIGGDWLQGATLRHYVELMGVR
PPDWLNHLRFYLVPVGGSCGSVARHLSQMDQAYAVMFGSDNWTQLCERAA
ATAAAVSAVTTVNATALTTNLADAAGVAKSDIAELVQRIQRYLLAAGPCT
QIPIAEAMVNYKDEDSCQIFVPFVSDVRIGYLDAQASLDLEENAAGSNAV
GSGLGSGSASSSAIPIGSQSSPNVHGVVSGSPPQQQSLGRISPPLQTPPS
SASSHRERNTSESLSTPSSVQQQSFSGALAAAEAVELQVDYWPLVRPGEG
HAKESKGGLSKGSDAGGKNSIKSTFRNLQVWRLPQHAQQLGDMFNGLTVS
FATKEKKQKQIMRLGKKKDKERDLEKEQCVEGVARLICSPKQSHPVPLRV
YIDGTEWTGVKFFQVSSQWQTHVKNFPIALIGCTPMSCAELS*
BS27961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KrT95D-PD | 842 | CG5405-PD | 1..842 | 1..842 | 4330 | 100 | Plus |
| KrT95D-PA | 1175 | CG5405-PA | 334..1175 | 1..842 | 4330 | 100 | Plus |
| KrT95D-PB | 1175 | CG5405-PB | 334..1175 | 1..842 | 4330 | 100 | Plus |
| KrT95D-PF | 1133 | CG5405-PF | 334..1133 | 1..842 | 4055 | 95 | Plus |
| KrT95D-PC | 1133 | CG5405-PC | 334..1133 | 1..842 | 4055 | 95 | Plus |
