BS27965.complete Sequence
818 bp assembled on 2011-09-30
GenBank Submission: KX803857
> BS27965.complete
GAAGTTATCAGTCGACATGGATTGTCCTATGCTCCTATCTCGTTACAGGC
GCTATGAGGAGGATCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAA
TACTTGCTGATCGTCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGT
GCTAACCCTCTTCTGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGG
AGAGTCCCAAGCAGCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGC
TTCGTCACGCTCTCCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTG
CGTGAAGCAAATCTATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGG
CCATTCCGTGCATCGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGAC
GCGTTGCATAAGGTCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGT
GACAATGGGCATGTTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTC
TGGTAATGCTGTGCTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATG
GTGCCCATCCACGCCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGC
CACATCCGTCACGGGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGG
CGGGCGTGAGCAGTGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCC
ATCGGCGTGACCCTGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCG
GCGTTCCAATGCGCCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTT
AGAAGCTTTCTAGACCAT
BS27965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 804 | CG8776-PB | 51..804 | 49..802 | 3770 | 100 | Plus |
| nemy-RA | 873 | CG8776-PA | 120..873 | 49..802 | 3770 | 100 | Plus |
| nemy-RG | 804 | CG8776-PG | 51..804 | 49..802 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 1804 | CG8776-RB | 304..1058 | 49..803 | 3775 | 100 | Plus |
| nemy-RC | 1601 | CG8776-RC | 101..855 | 49..803 | 3775 | 100 | Plus |
| nemy-RA | 1994 | CG8776-RA | 494..1248 | 49..803 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661229 | 272..16 | 1285 | 100 | Minus |
| 2R | 25286936 | 2R | 12660678..12660900 | 495..273 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12660457..12660630 | 660..487 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12660243..12660387 | 803..659 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:59:44 has no hits.
BS27965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:04 Download gff for
BS27965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RF | 523..1308 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:56:45 Download gff for
BS27965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 492..1245 | 49..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:05 Download gff for
BS27965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 494..1247 | 49..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:05 Download gff for
BS27965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12660244..12660385 | 661..802 | 100 | <- | Minus |
| 2R | 12660457..12660621 | 496..660 | 100 | <- | Minus |
| 2R | 12660678..12660900 | 273..495 | 100 | <- | Minus |
| 2R | 12660973..12661228 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:56:45 Download gff for
BS27965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8547749..8547890 | 661..802 | 100 | <- | Minus |
| arm_2R | 8547962..8548126 | 496..660 | 100 | <- | Minus |
| arm_2R | 8548183..8548405 | 273..495 | 100 | <- | Minus |
| arm_2R | 8548478..8548733 | 17..272 | 100 | | Minus |
BS27965.pep Sequence
Translation from 16 to 801
> BS27965.pep
MDCPMLLSRYRRYEEDPDNAWNCCSWCEYLLIVILSTILLVGVLVLTLFW
VMFYRDGFAWSESPKQQFNLHPILMIAGFVTLSGFSILIYRLCRCVKQIY
VKLIHMFFHAVAIPCIALGFISVFASHDALHKVNFYSLHSWLGFVTMGMF
VLQFVIGFFSFLVMLCCENKTYSCRSAMVPIHASLGLANFWLAIATSVTG
LIEKERETVNEAGVSSENKLVEHYITSAIGVTLIFIGIIVTFAVRRSNAP
ASAKVYVTERI*
BS27965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-PA | 290 | CG8776-PA | 40..290 | 11..261 | 1310 | 99.6 | Plus |
| nemy-PB | 267 | CG8776-PB | 18..267 | 12..261 | 1308 | 100 | Plus |
| nemy-PG | 267 | CG8776-PG | 18..267 | 12..261 | 1308 | 100 | Plus |
| nemy-PE | 267 | CG8776-PE | 18..267 | 12..261 | 1308 | 100 | Plus |
| nemy-PL | 256 | CG8776-PL | 7..256 | 11..261 | 1294 | 99.2 | Plus |
