Clone BS27967 Report

Search the DGRC for BS27967

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:279
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptAP-1sigma-RB
Protein status:BS27967.pep: full length peptide match
Sequenced Size:506

Clone Sequence Records

BS27967.complete Sequence

506 bp assembled on 2011-09-30

GenBank Submission: KX806275

> BS27967.complete
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGACGA
AGCCGTTGAGGGCACTTTAAGAGACATTGGACTCCTCTAAAAGCTTTCTA
GACCAT

BS27967.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RC 474 CG5864-PC 1..474 17..490 2370 100 Plus
AP-1sigma-RB 474 CG5864-PB 1..474 17..490 2370 100 Plus
AP-1sigma-RA 474 CG5864-PA 1..431 17..447 2155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-RC 795 CG5864-RC 146..620 17..491 2375 100 Plus
AP-1sigma-RB 1181 CG5864-RB 146..620 17..491 2375 100 Plus
AP-1sigma-RA 1079 CG5864-RA 146..576 17..447 2155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23959031..23959212 19..200 910 100 Plus
3R 32079331 3R 23959456..23959594 308..446 695 100 Plus
3R 32079331 3R 23959278..23959390 197..309 565 100 Plus
3R 32079331 3R 23960896..23960943 444..491 240 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:00:25 has no hits.

BS27967.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:06 Download gff for BS27967.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 143..614 17..488 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:59:24 Download gff for BS27967.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 146..617 17..488 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:26 Download gff for BS27967.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 146..617 17..488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:26 Download gff for BS27967.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23959456..23959593 308..445 100 -> Plus
3R 23960898..23960940 446..488 100   Plus
3R 23959280..23959388 199..307 100 -> Plus
3R 23959030..23959210 17..198 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:59:24 Download gff for BS27967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19784752..19784932 17..198 99 -> Plus
arm_3R 19785002..19785110 199..307 100 -> Plus
arm_3R 19785178..19785315 308..445 100 -> Plus
arm_3R 19786620..19786662 446..488 100   Plus

BS27967.pep Sequence

Translation from 16 to 489

> BS27967.pep
MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFL
EWKDCKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE
LDIIFNFEKAYFILDELLIGGEIQETSKKNVLKAIASQDLLQEDEAVEGT
LRDIGLL*

BS27967.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-PC 157 CG5864-PC 1..157 1..157 809 100 Plus
AP-1sigma-PB 157 CG5864-PB 1..157 1..157 809 100 Plus
AP-1sigma-PA 157 CG5864-PA 1..156 1..156 761 94.9 Plus
AP-1sigma-PD 152 CG5864-PD 1..145 1..145 746 99.3 Plus
AP-2sigma-PA 142 CG6056-PA 1..142 1..142 366 46.5 Plus