BS27968.complete Sequence
2744 bp assembled on 2013-09-16
GenBank Submission: KX803170
> BS27968.complete
GAAGTTATCAGTCGACATGCCACCCAGACCTCCGCCAAAGAATATTCGGC
GAGTTGAGCCCCCTACCATTCCCAGCCAGCAGCTATCGTCTTCGCCCAAA
AGGGAGACATATATGATCAACACGATGCCAAGCAGTTCAAGCGGCAGTCT
CTGCATTGACAGCCTGGGCAATTCGCTGGAGCGGAACATCAAGCCGTCTG
ATATACTACGTCAGAAATCATCTGATAATTTGGATTCCAAGTACTCGGCA
AAACGGAAAACCACACCGGAGCTTAGTAAATTTGTGAACGTAAACAATCC
TGAATTAATGGAGGAGCTCGGTCGTAAGATGGTAAGCAAGGCAGACAGCC
TGGAACAAACGAGGAGGAACGACTCGTCGCCTTCTGGCTGTGGTAGCCTA
GGACGCACTTCCTCCACGCCTGGGCGATCGTTGACTCCTGGACGAACCGG
AGTTGGTGCCTCGCCAACTGGTAGTCTAAGTAAAACCGGAAAACTGGCAA
TGGCGGACAGCAGCTCCACTAGCAGTCTAGAGAGGAGATCGTGCCTGCAG
GCTGTCGATGCGGACATTGGAACGGAATCGCGGGAATCGGGTGCCAACCA
GCGTAGTGTAGGGTCCAAGGAGTCGCTGACATCACAAGGCATATCGGAGG
TGATCAAGAGCTACGAAAGCGTGTCTTCGCTAAGTTCGGAAAGTGCAAAG
GCGGTGGCTTCCCAACAGTCGGCGGCAGCGGGCGGAGCTTTAGCGGAGTG
TGAACCGTACTATGATAGCGTACCGCTCGACAACGGCGACGGAGAATACG
TTTTTATTAAGCCCGGCCGCACCGGATCCTCATCCAGTCGCGATGATTTG
TCGACGCCTGGGAGCAGCATTTTGCCTTTGCCTAATGTAGCGGATCCCGA
ATCTCCAGGCAGGACCTCTAACTACGTCAACATCGATTTCTTCCTTCAGC
AAGGAATTGAGACGCGCTCCAGTTCGCTAGACAGTGACGGGGAGTACGAG
GGTCCGCCCATATTACGCACCATTTCGCACGACGATCAAACCACAACACA
AACTACTCCGGGAGCAATTCGCAAGGTTTGTGGAAATGCGCGCGGTGCTA
AAATACGTTCCATACTTAGCTCAATTATTCAAAGTGAGACTATCTACGTG
GAATGCCTCAATAAAATGATGCAGTACAAGAAGGCCATCCACGCAACCCT
AACTACTTCGCAGCCTGTGATCAGGGAGGAGGAGGAGAACACAATTTTCT
TTAAAATTGATGAGCTTTACGATCTGCATACCGGTTTCTTATCTGATTTA
AAGACTATTGTGTCTCACGAGGGTGGTGATGTGCTGATCGGTGAGCCGTT
TCGTCGACTGGCGGAGATGTTTGACTTATACAGTGCCTTTTTGCACAACT
ACAAAAATGCTATTGAGACTGTGAAGAAGTGCAGTGCCAATAACCCCCAG
TTTAAAAAGATCGTCTCCACCATTGTGCTTAATCTGCAGACGGAACAATC
GCTAACTCTCGAGGATCTATTGCACAAACCTGTTGCGAGGGTACAAATCA
ACGCATTGGTCTTCAACGATTTGCTACGCGAAACCCCAAATGCGCATCCG
GATCACCAGCCATTAAGGCAGGCGCAAAAGATTATTCAGATGTTCCTCAA
TCAGTTCAATGTGGTCAATCAGCGGTTGCCCATTGAATCGAATCGAAATT
TAAGACGCATGGTGCGTAATTCTTTTATTGTAGAACTTGTCGATGGACAT
CGTAAGCTGCGGCATCTCTTTCTTTTTAATGATGTCATCGCATGTGCCAA
ATACAAAGCATTAGGCCGCGATCGTATCGACTATGAGCTCAAATGGTTCA
TTCCGCTAAAAGACGTATCCATTTACGAGGAAGCAGATCCGGCGGTCGAG
CTTAAGGAATCTAGTCCAGCAAACATTTCGCAAGTAAAACGCAATTTGCG
ATCCGTTCGAGATCAATTGGCCATGGAGGTGGCTAACAGTGGAAGTGGAG
CCTTCCGTTCCGGTGATAAGTATCGCCGCAAGCTGGCGGATCTGGAATCA
CAGCTGGTGCTGGCAACGCCCAATTTAGTGTTGCGCCTGGGGAACAAGGC
AAATAATAAAACCATAACCTTCTTTCTTAGCTCGGATTTTGAGAGGACGC
AGTGGATCGACTCAATCTTATCCCTTAAGCAAAAATGCAACCTGCCTGGA
GCAAATACTATTAATTCCCTGGAGGTTACCGCCTTCATTGTAGCCATGCA
GAAGGGCATGAAAACCGAAATGGGTTCATATCTTATGCGTAACACTAACG
ACGAGAGCCTGTTGGTTGGGGACCTGTACATGGGAGTTCATGGATTGGAA
GGACTGGAGCAAGCGAACGACCTGTACATCTGCGTCGAGGTGGACTCCTA
TGGCCACTATTTTCGCAAGGCCACCACCAAGAAGATATGTCGCAGTCAAA
CGCCGCTCTGGAACGAAAGCTTTATGCTGGAACTGGAGGGCAGCCAGAAT
GTACGCATTCTTCTTTATGAGGCTAAGGAGCGACCGCTTCTTAAAGCCAA
GCACATACTTAAGTTGAGTTTAAGTTGGCTGACAGAAACAACGCAGCCGA
AGTCAATTAAACTTACTGAGACCTTAGAGCTCGGCTGTAGCTTCCGTTTT
ATACCAGGCGAGCTCTTCCGCGGCAGCACAAAGCCAGGAGCCCTCTTCGG
TGCCAAAATGAGTCAAGTATTAAAGTAAAAGCTTTCTAGACCAT
BS27968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RC | 2712 | CG40494-PC | 1..2712 | 17..2728 | 13560 | 100 | Plus |
| RhoGAP1A-RF | 2712 | CG40494-PF | 1..2712 | 17..2728 | 13560 | 100 | Plus |
| RhoGAP1A-RB | 4212 | CG40494-PB | 904..3632 | 17..2724 | 13295 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RC | 4254 | CG40494-RC | 1431..4143 | 17..2729 | 13565 | 100 | Plus |
| RhoGAP1A-RF | 3824 | CG40494-RF | 1001..3713 | 17..2729 | 13565 | 100 | Plus |
| RhoGAP1A-RB | 5012 | CG00000-RB | 1208..3936 | 17..2724 | 13295 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 137250..138260 | 1169..2179 | 5055 | 100 | Plus |
| X | 23542271 | X | 133500..134127 | 25..652 | 3140 | 100 | Plus |
| X | 23542271 | X | 138320..138705 | 2178..2563 | 1930 | 100 | Plus |
| X | 23542271 | X | 134268..134565 | 652..949 | 1490 | 100 | Plus |
| X | 23542271 | X | 138768..138935 | 2562..2729 | 840 | 100 | Plus |
| X | 23542271 | X | 134634..134762 | 949..1077 | 645 | 100 | Plus |
| X | 23542271 | X | 136633..136733 | 1074..1174 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:03:47 has no hits.
BS27968.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:10 Download gff for
BS27968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RF | 1001..3710 | 17..2726 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:25 Download gff for
BS27968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RF | 1001..3710 | 17..2726 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:25 Download gff for
BS27968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 134634..134760 | 949..1075 | 100 | -> | Plus |
| X | 136635..136733 | 1076..1174 | 100 | -> | Plus |
| X | 133500..134127 | 25..652 | 100 | -> | Plus |
| X | 134269..134564 | 653..948 | 100 | -> | Plus |
| X | 137256..138260 | 1175..2179 | 100 | -> | Plus |
| X | 138322..138705 | 2180..2563 | 100 | -> | Plus |
| X | 138770..138932 | 2564..2726 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:10 Download gff for
BS27968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 29887..30514 | 25..652 | 100 | -> | Plus |
| arm_X | 30656..30951 | 653..948 | 100 | -> | Plus |
| arm_X | 31021..31147 | 949..1075 | 100 | -> | Plus |
| arm_X | 33022..33120 | 1076..1174 | 100 | -> | Plus |
| arm_X | 34709..35092 | 2180..2563 | 100 | -> | Plus |
| arm_X | 33643..34647 | 1175..2179 | 100 | -> | Plus |
| arm_X | 35157..35319 | 2564..2726 | 100 | | Plus |
BS27968.pep Sequence
Translation from 16 to 2727
> BS27968.pep
MPPRPPPKNIRRVEPPTIPSQQLSSSPKRETYMINTMPSSSSGSLCIDSL
GNSLERNIKPSDILRQKSSDNLDSKYSAKRKTTPELSKFVNVNNPELMEE
LGRKMVSKADSLEQTRRNDSSPSGCGSLGRTSSTPGRSLTPGRTGVGASP
TGSLSKTGKLAMADSSSTSSLERRSCLQAVDADIGTESRESGANQRSVGS
KESLTSQGISEVIKSYESVSSLSSESAKAVASQQSAAAGGALAECEPYYD
SVPLDNGDGEYVFIKPGRTGSSSSRDDLSTPGSSILPLPNVADPESPGRT
SNYVNIDFFLQQGIETRSSSLDSDGEYEGPPILRTISHDDQTTTQTTPGA
IRKVCGNARGAKIRSILSSIIQSETIYVECLNKMMQYKKAIHATLTTSQP
VIREEEENTIFFKIDELYDLHTGFLSDLKTIVSHEGGDVLIGEPFRRLAE
MFDLYSAFLHNYKNAIETVKKCSANNPQFKKIVSTIVLNLQTEQSLTLED
LLHKPVARVQINALVFNDLLRETPNAHPDHQPLRQAQKIIQMFLNQFNVV
NQRLPIESNRNLRRMVRNSFIVELVDGHRKLRHLFLFNDVIACAKYKALG
RDRIDYELKWFIPLKDVSIYEEADPAVELKESSPANISQVKRNLRSVRDQ
LAMEVANSGSGAFRSGDKYRRKLADLESQLVLATPNLVLRLGNKANNKTI
TFFLSSDFERTQWIDSILSLKQKCNLPGANTINSLEVTAFIVAMQKGMKT
EMGSYLMRNTNDESLLVGDLYMGVHGLEGLEQANDLYICVEVDSYGHYFR
KATTKKICRSQTPLWNESFMLELEGSQNVRILLYEAKERPLLKAKHILKL
SLSWLTETTQPKSIKLTETLELGCSFRFIPGELFRGSTKPGALFGAKMSQ
VLK*
BS27968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-PC | 903 | CG40494-PC | 1..903 | 1..903 | 4588 | 100 | Plus |
| RhoGAP1A-PF | 903 | CG40494-PF | 1..903 | 1..903 | 4588 | 100 | Plus |
| RhoGAP1A-PB | 1403 | CG00000-PB | 302..1211 | 1..903 | 4570 | 99.2 | Plus |
| RhoGAP1A-PA | 1403 | CG00000-PA | 302..1211 | 1..903 | 4570 | 99.2 | Plus |
| RhoGAP1A-PE | 1404 | CG40494-PE | 302..1212 | 1..903 | 4558 | 99.1 | Plus |
