BS27970.complete Sequence
1358 bp assembled on 2013-09-16
GenBank Submission: KX804393
> BS27970.complete
GAAGTTATCAGTCGACATGCGCAAATTGGAGCATTGTAATATTGTGAAGC
TTTTGTACTTTTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTG
AATTTAGTCCTCGAATATATACCAGAAACCGTATACAAAGTGGCTCGCCA
ATATGCCAAAACCAAGCAAACGATACCAATCAACTTTATTCGGCTCTACA
TGTATCAACTGTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGC
CATCGTGATATCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGT
GCTGAAGCTCTGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGC
CGAATGTATCGTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATC
TTTGGCGCCATCAATTATACAACAAAGATCGATGTCTGGAGTGCCGGTTG
CGTTTTGGCCGAACTGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCG
GTGTGGATCAGCTCGTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGA
GAACAGATACGCGAAATGAATCCAAACTACACGGAATTCAAGTTCCCTCA
GATTAAGAGTCATCCATGGCAGAAAGTTTTCCGTATACGCACTCCTACAG
AAGCTATCAACTTGGTGTCCCTGCTGCTCGAGTATACGCCCAGTGCCAGG
ATCACACCGCTCAAGGCCTGCGCACATCCGTTCTTCGATGAGCTACGCAT
GGAGGGTAATCACACCTTGCCCAACGGTCGCGATATGCCGCCGCTGTTCA
ACTTCACAGAGCATGAGCTCTCAATACAGCCCAGCCTAGTGCCGCAGTTG
TTGCCCAAGCATCTGCAGAACGCATCCGGACCTGGCGGCAATCGACCCTC
GGCCGGCGGAGCAGCCTCCATTGCGGCCAGCGGCTCCACCAGCGTCTCGT
CAACGGGCAGTGGTGCCTCGGTGGAAGGATCCGCCCAGCCACAGTCGCAG
GGTACAGCAGCAGCTGCGGGATCCGGATCGGGCGGAGCAACAGCAGGAAC
CGGCGGAGCGAGTGCCGGTGGACCCGGATCTGGTAACAACAGTAGCAGCG
GCGGAGCATCGGGAGCGCCGTCCGCTGTGGCTGCCGGAGGAGCCAATGCC
GCCGTCGCTGGCGGTGCTGGTGGTGGTGGCGGAGCCGGTGCGGCGACCGC
AGCTGCAACAGCAACTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCA
ATGTAACAGCTGGTGTCCATCTCATGATGCGGCAACATCGCAAGTTGCCG
TTGTCGGGGAAGCCCTTCGTCCGCTATACGGCCAACATTTGAAAGCTTTC
TAGACCAT
BS27970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RO | 1326 | CG2621-PO | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| sgg-RR | 1794 | CG2621-PR | 361..1603 | 17..1259 | 6215 | 100 | Plus |
| sgg-RQ | 3507 | CG2621-PQ | 2074..3316 | 17..1259 | 6215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RO | 2166 | CG2621-RO | 556..1881 | 17..1342 | 6630 | 100 | Plus |
| sgg-RR | 5004 | CG5-RR | 1309..2551 | 17..1259 | 6215 | 100 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2511..3753 | 17..1259 | 6215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2673174..2673618 | 815..1259 | 2225 | 100 | Plus |
| X | 23542271 | X | 2671307..2671545 | 193..431 | 1195 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 431..627 | 985 | 100 | Plus |
| X | 23542271 | X | 2672914..2673103 | 626..815 | 950 | 100 | Plus |
| X | 23542271 | X | 2671119..2671231 | 81..193 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 260..540 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2673904..2673988 | 1258..1342 | 425 | 100 | Plus |
| X | 23542271 | X | 2670192..2670257 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1048..1141 | 975..1067 | 117 | 62.9 | Plus |
BS27970.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:03 Download gff for
BS27970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RO | 556..1880 | 17..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:19 Download gff for
BS27970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RO | 556..1880 | 17..1341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:19 Download gff for
BS27970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2671121..2671231 | 83..193 | 100 | -> | Plus |
| X | 2671308..2671545 | 194..431 | 100 | -> | Plus |
| X | 2671629..2671822 | 432..625 | 100 | -> | Plus |
| X | 2672914..2673103 | 626..815 | 100 | -> | Plus |
| X | 2673175..2673618 | 816..1259 | 100 | -> | Plus |
| X | 2673906..2673987 | 1260..1341 | 100 | | Plus |
| X | 2670192..2670257 | 17..82 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:03 Download gff for
BS27970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2564225..2564290 | 17..82 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 83..193 | 100 | -> | Plus |
| arm_X | 2565341..2565578 | 194..431 | 100 | -> | Plus |
| arm_X | 2565662..2565855 | 432..625 | 100 | -> | Plus |
| arm_X | 2566947..2567136 | 626..815 | 100 | -> | Plus |
| arm_X | 2567208..2567651 | 816..1259 | 100 | -> | Plus |
| arm_X | 2567939..2568020 | 1260..1341 | 100 | | Plus |
BS27970.pep Sequence
Translation from 16 to 1341
> BS27970.pep
MRKLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVARQYAKTK
QTIPINFIRLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPETAVLKLCD
FGSAKQLLHGEPNVSYICSRYYRAPELIFGAINYTTKIDVWSAGCVLAEL
LLGQPIFPGDSGVDQLVEVIKVLGTPTREQIREMNPNYTEFKFPQIKSHP
WQKVFRIRTPTEAINLVSLLLEYTPSARITPLKACAHPFFDELRMEGNHT
LPNGRDMPPLFNFTEHELSIQPSLVPQLLPKHLQNASGPGGNRPSAGGAA
SIAASGSTSVSSTGSGASVEGSAQPQSQGTAAAAGSGSGGATAGTGGASA
GGPGSGNNSSSGGASGAPSAVAAGGANAAVAGGAGGGGGAGAATAAATAT
GAIGATNAGGANVTAGVHLMMRQHRKLPLSGKPFVRYTANI*
BS27970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-PO | 441 | CG2621-PO | 1..441 | 1..441 | 2285 | 100 | Plus |
| sgg-PN | 416 | CG2621-PN | 1..414 | 1..414 | 2143 | 100 | Plus |
| sgg-PK | 416 | CG2621-PK | 1..414 | 1..414 | 2143 | 100 | Plus |
| sgg-PG | 496 | CG2621-PG | 81..494 | 1..414 | 2143 | 100 | Plus |
| sgg-PC | 514 | CG2621-PC | 99..512 | 1..414 | 2143 | 100 | Plus |
