BS27972.complete Sequence
560 bp assembled on 2011-09-30
GenBank Submission: KX801437
> BS27972.complete
GAAGTTATCAGTCGACATGGCGCACTTGGTGGTTAGGGTGATTGAGCGTT
GTGAGAATGCCAACGAAAGTGCTCATTTAGATCTTTCAAGTTGTGAACTG
ATGCAAATACCAGATGCGGTATATCATCTTATGCGAAACACAGAGTTGAT
CACCTGCAATCTCAGTGGCAATGTGCTCAAAAGCGTTTCGCCCAAGTTTT
CGCAAAAGTTTAGTACCATCACAGATCTTAATCTGTCACACAACAAACTG
TCGAGGCTGCCAGAAGAATTCGCCAGCTTGTCTGCGCTAACCAAGCTGAA
TATCTCGAACAATTCATTTATCGTTTTGCCACAAGTAGTCTTTAAGCTTC
AGAGTCTTGCCAGTCTGGATGCCCAGAACAATGCCATTTTGGAAATTGAT
ACCGATGAGGCAATTACCAGTGACAATTTGGCCCTCGTTGATCTTCGGAA
TAATCCGCTGAGCAGAAACTGCCGACGAAAGCTGCAGAGCTTCAAGACCC
CCTTCCACCTTGAGATCTCCAAGGATGTCGAAGACGACTGGTAAAAGCTT
TCTAGACCAT
BS27972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RB | 528 | CG2471-PB | 1..528 | 17..544 | 2640 | 100 | Plus |
Sclp-RA | 750 | CG2471-PA | 286..750 | 80..544 | 2325 | 100 | Plus |
Sclp-RC | 1020 | CG2471-PC | 286..748 | 80..542 | 2315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-RB | 770 | CG2471-RB | 110..638 | 17..545 | 2645 | 100 | Plus |
Sclp-RA | 1102 | CG2471-RA | 505..970 | 80..545 | 2330 | 100 | Plus |
Sclp-RC | 1766 | CG74-RC | 505..967 | 80..542 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11921998..11922168 | 392..222 | 855 | 100 | Minus |
X | 23542271 | X | 11921779..11921932 | 545..392 | 770 | 100 | Minus |
X | 23542271 | X | 11922230..11922375 | 224..79 | 730 | 100 | Minus |
X | 23542271 | X | 11922588..11922651 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:56:36 has no hits.
BS27972.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:01 Download gff for
BS27972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RB | 110..635 | 17..542 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:48:38 Download gff for
BS27972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RB | 110..635 | 17..542 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:43 Download gff for
BS27972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sclp-RB | 110..635 | 17..542 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:43 Download gff for
BS27972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11921782..11921931 | 393..542 | 100 | <- | Minus |
X | 11921998..11922165 | 225..392 | 100 | <- | Minus |
X | 11922230..11922373 | 81..224 | 100 | <- | Minus |
X | 11922588..11922651 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:48:38 Download gff for
BS27972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11815815..11815964 | 393..542 | 100 | <- | Minus |
arm_X | 11816031..11816198 | 225..392 | 100 | <- | Minus |
arm_X | 11816263..11816406 | 81..224 | 100 | <- | Minus |
arm_X | 11816621..11816684 | 17..80 | 100 | | Minus |
BS27972.pep Sequence
Translation from 16 to 543
> BS27972.pep
MAHLVVRVIERCENANESAHLDLSSCELMQIPDAVYHLMRNTELITCNLS
GNVLKSVSPKFSQKFSTITDLNLSHNKLSRLPEEFASLSALTKLNISNNS
FIVLPQVVFKLQSLASLDAQNNAILEIDTDEAITSDNLALVDLRNNPLSR
NCRRKLQSFKTPFHLEISKDVEDDW*
BS27972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sclp-PB | 175 | CG2471-PB | 1..175 | 1..175 | 883 | 100 | Plus |
Sclp-PA | 249 | CG2471-PA | 79..249 | 5..175 | 828 | 95.3 | Plus |
Sclp-PC | 339 | CG2471-PC | 79..249 | 5..175 | 828 | 95.3 | Plus |
f-cup-PE | 620 | CG9611-PE | 442..572 | 16..148 | 188 | 37.8 | Plus |
f-cup-PB | 650 | CG9611-PB | 472..602 | 16..148 | 188 | 37.8 | Plus |