Clone BS27972 Report

Search the DGRC for BS27972

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:279
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSclp-RB
Protein status:BS27972.pep: full length peptide match
Sequenced Size:560

Clone Sequence Records

BS27972.complete Sequence

560 bp assembled on 2011-09-30

GenBank Submission: KX801437

> BS27972.complete
GAAGTTATCAGTCGACATGGCGCACTTGGTGGTTAGGGTGATTGAGCGTT
GTGAGAATGCCAACGAAAGTGCTCATTTAGATCTTTCAAGTTGTGAACTG
ATGCAAATACCAGATGCGGTATATCATCTTATGCGAAACACAGAGTTGAT
CACCTGCAATCTCAGTGGCAATGTGCTCAAAAGCGTTTCGCCCAAGTTTT
CGCAAAAGTTTAGTACCATCACAGATCTTAATCTGTCACACAACAAACTG
TCGAGGCTGCCAGAAGAATTCGCCAGCTTGTCTGCGCTAACCAAGCTGAA
TATCTCGAACAATTCATTTATCGTTTTGCCACAAGTAGTCTTTAAGCTTC
AGAGTCTTGCCAGTCTGGATGCCCAGAACAATGCCATTTTGGAAATTGAT
ACCGATGAGGCAATTACCAGTGACAATTTGGCCCTCGTTGATCTTCGGAA
TAATCCGCTGAGCAGAAACTGCCGACGAAAGCTGCAGAGCTTCAAGACCC
CCTTCCACCTTGAGATCTCCAAGGATGTCGAAGACGACTGGTAAAAGCTT
TCTAGACCAT

BS27972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RB 528 CG2471-PB 1..528 17..544 2640 100 Plus
Sclp-RA 750 CG2471-PA 286..750 80..544 2325 100 Plus
Sclp-RC 1020 CG2471-PC 286..748 80..542 2315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RB 770 CG2471-RB 110..638 17..545 2645 100 Plus
Sclp-RA 1102 CG2471-RA 505..970 80..545 2330 100 Plus
Sclp-RC 1766 CG74-RC 505..967 80..542 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11921998..11922168 392..222 855 100 Minus
X 23542271 X 11921779..11921932 545..392 770 100 Minus
X 23542271 X 11922230..11922375 224..79 730 100 Minus
X 23542271 X 11922588..11922651 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:56:36 has no hits.

BS27972.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:01 Download gff for BS27972.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RB 110..635 17..542 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:48:38 Download gff for BS27972.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RB 110..635 17..542 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:43 Download gff for BS27972.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RB 110..635 17..542 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:43 Download gff for BS27972.complete
Subject Subject Range Query Range Percent Splice Strand
X 11921782..11921931 393..542 100 <- Minus
X 11921998..11922165 225..392 100 <- Minus
X 11922230..11922373 81..224 100 <- Minus
X 11922588..11922651 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:48:38 Download gff for BS27972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11815815..11815964 393..542 100 <- Minus
arm_X 11816031..11816198 225..392 100 <- Minus
arm_X 11816263..11816406 81..224 100 <- Minus
arm_X 11816621..11816684 17..80 100   Minus

BS27972.pep Sequence

Translation from 16 to 543

> BS27972.pep
MAHLVVRVIERCENANESAHLDLSSCELMQIPDAVYHLMRNTELITCNLS
GNVLKSVSPKFSQKFSTITDLNLSHNKLSRLPEEFASLSALTKLNISNNS
FIVLPQVVFKLQSLASLDAQNNAILEIDTDEAITSDNLALVDLRNNPLSR
NCRRKLQSFKTPFHLEISKDVEDDW*

BS27972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-PB 175 CG2471-PB 1..175 1..175 883 100 Plus
Sclp-PA 249 CG2471-PA 79..249 5..175 828 95.3 Plus
Sclp-PC 339 CG2471-PC 79..249 5..175 828 95.3 Plus
f-cup-PE 620 CG9611-PE 442..572 16..148 188 37.8 Plus
f-cup-PB 650 CG9611-PB 472..602 16..148 188 37.8 Plus