BS27976.complete Sequence
887 bp assembled on 2011-10-06
GenBank Submission: KX803482
> BS27976.complete
GAAGTTATCAGTCGACATGGGCGAGCGGGATCAGCCACAGAGCTCAGAGC
GGATCTCAATATTTAATCCGCCAGTATACACGCAGCACCAGGTGCGCAAT
GAAGCCCCCTACATACCCACCACATTTGACCTCCTCTCAGACGATGAGGA
GTCGTCACAGAGAGTTGCCAACGCCGGGCCATCTTTCAGGCCCTTGACTT
ACTCGGATGCTGTGCGTCTAAGCCAGAATGGCTTCGCCAACTCCCGCGTA
AGTGGGCACTCCAGCTATACGGTGCGCAGACCACCGGCACTAGTTGACAG
AAGCATTCTATCCCAGGAAATGGAGCGCATGGACCAAGAGCAGTATATCT
ACCTTATCCGTACCGCAGCCCAAAGTAATTCCGTGGGCAGTCACTACGCC
GAACCGGTTACTGATAACTCGGAGGTCAAGAAAGTCAGTGAAACCAACAA
AAGTGACGCACCACAGCCGTTAACCCCTCAACCTACCAGACTCACCAGAA
CAGAATCCTTGCACCGTCGTTTTGCCAGCTGCGTCAACTTAAATGATGAC
TTCGCCGAGCAATTTAAAGCAAGAGCGGCGGACTGTGAAGAGAAATCCAA
ACATCGTCTTAGATTAGCTGAAGAGCAGAGGCTTTTTTCGAATTTCAGTG
CTATAAAGAACATAGATGAACTCCGTGCCTATGAACGAAAAGTAGTGGAA
AACATATTCCAGTCTTGTATCGCCCACAAGCCCATTTTTGTACTCGGGCC
CTTGGACAAGCCAAATGTGAAGAAAGTGACCAAGCTCATTCCGTTAACAG
AGGAGCACCACGATCGCTTTAACGAAATTACACAGGATGATAAATCGACG
GTATGGCAACGAATATATTGAAAGCTTTCTAGACCAT
BS27976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11023-RB | 855 | CG11023-PB | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG11023-RC | 1443 | CG11023-PC | 1..835 | 17..851 | 4175 | 100 | Plus |
| CG11023-RD | 819 | CG11023-PD | 1..437 | 17..453 | 2185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11023-RB | 1880 | CG11023-RB | 151..1006 | 16..871 | 4280 | 100 | Plus |
| CG11023-RC | 1802 | CG11023-RC | 151..986 | 16..851 | 4180 | 100 | Plus |
| CG11023-RD | 1844 | CG11023-RD | 151..588 | 16..453 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7679..8116 | 16..453 | 2190 | 100 | Plus |
| 2L | 23513712 | 2L | 8191..8610 | 452..871 | 2100 | 100 | Plus |
| X | 23542271 | X | 19204495..19204830 | 364..17 | 760 | 81.9 | Minus |
| X | 23542271 | X | 19203584..19203789 | 832..627 | 325 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:05:06 has no hits.
BS27976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-06 16:05:37 Download gff for
BS27976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 152..1005 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:57 Download gff for
BS27976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 152..1005 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:51 Download gff for
BS27976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 152..1005 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:51 Download gff for
BS27976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7680..8116 | 17..453 | 100 | -> | Plus |
| 2L | 8193..8609 | 454..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:57 Download gff for
BS27976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7680..8116 | 17..453 | 100 | -> | Plus |
| arm_2L | 8193..8609 | 454..870 | 100 | | Plus |
BS27976.pep Sequence
Translation from 16 to 870
> BS27976.pep
MGERDQPQSSERISIFNPPVYTQHQVRNEAPYIPTTFDLLSDDEESSQRV
ANAGPSFRPLTYSDAVRLSQNGFANSRVSGHSSYTVRRPPALVDRSILSQ
EMERMDQEQYIYLIRTAAQSNSVGSHYAEPVTDNSEVKKVSETNKSDAPQ
PLTPQPTRLTRTESLHRRFASCVNLNDDFAEQFKARAADCEEKSKHRLRL
AEEQRLFSNFSAIKNIDELRAYERKVVENIFQSCIAHKPIFVLGPLDKPN
VKKVTKLIPLTEEHHDRFNEITQDDKSTVWQRIY*
BS27976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11023-PB | 284 | CG11023-PB | 1..284 | 1..284 | 1468 | 100 | Plus |
| CG11023-PC | 480 | CG11023-PC | 1..278 | 1..278 | 1432 | 100 | Plus |
| CG11023-PD | 272 | CG11023-PD | 1..272 | 1..284 | 1379 | 95.8 | Plus |
| Ulp1-PA | 1513 | CG12359-PA | 932..1057 | 1..132 | 442 | 68.2 | Plus |
| Ulp1-PA | 1513 | CG12359-PA | 1169..1309 | 128..278 | 312 | 45 | Plus |
